1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e032609_P001

Zm00001e032609_P001 (AGO4, OCP11, Zm00001e032609)


Aliases : AGO4, OCP11, Zm00001e032609

Description : siRNA-integrating factor (AGO)


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032609_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 AGO4, OCP11,... Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
AMTR_s00122p00122810 PNH, AGO10, ZLL,... Chromatin organisation.DNA methylation.canonical... 0.06 OrthoFinder output from all 47 species
AT1G31280 AGO2 Argonaute family protein 0.03 OrthoFinder output from all 47 species
AT2G27040 AGO4, OCP11 Argonaute family protein 0.06 OrthoFinder output from all 47 species
Als_g18503 AGO4, OCP11 siRNA-integrating factor *(AGO) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G040900.1 AGO4, OCP11,... siRNA-integrating factor *(AGO) & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01037488001 AGO4, OCP11 Chromatin organisation.DNA methylation.canonical... 0.04 OrthoFinder output from all 47 species
LOC_Os01g16870.3 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.04 OrthoFinder output from all 47 species
LOC_Os02g58490.1 AGO1, LOC_Os02g58490 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
LOC_Os04g06770.2 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.06 OrthoFinder output from all 47 species
LOC_Os04g47870.1 AGO1, LOC_Os04g47870 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
LOC_Os06g39640.1 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.07 OrthoFinder output from all 47 species
Len_g18589 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Lfl_g03429 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Mp1g23190.1 AGO9 siRNA-integrating factor (AGO) 0.04 OrthoFinder output from all 47 species
Ore_g05462 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Solyc01g008960.3.1 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species
Solyc07g049500.3.1 AGO6, Solyc07g049500 siRNA-integrating factor (AGO) 0.04 OrthoFinder output from all 47 species
Solyc09g082830.4.1 PNH, AGO10, ZLL,... RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR032472 ArgoL2 421 466
IPR032474 Argonaute_N 56 217
IPR032473 Argonaute_Mid_dom 476 556
IPR003165 Piwi 565 875
IPR014811 ArgoL1 229 277
IPR003100 PAZ_dom 283 411
No external refs found!