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  5. Zm00001e032246_P002

Zm00001e032246_P002 (HDA3, ATHD2A, HDT1,...)


Aliases : HDA3, ATHD2A, HDT1, HD2A, Zm00001e032246

Description : histone deacetylase (HDT/HD2)


Gene families : OG0002165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002165_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032246_P002

Target Alias Description ECC score Gene Family Method Actions
AT2G27840 HDA13, HDT04, HDT4 histone deacetylase-related / HD-related 0.03 OrthoFinder output from all 47 species
AT3G44750 HDA3, ATHD2A, HDT1, HD2A histone deacetylase 3 0.07 OrthoFinder output from all 47 species
Adi_g045241 HDT3, HD2C HD2-type histone deacetylase *(HD2/HDT) & original... 0.02 OrthoFinder output from all 47 species
Adi_g045242 No alias HD2-type histone deacetylase *(HD2/HDT) & original... 0.02 OrthoFinder output from all 47 species
Adi_g082789 No alias HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Adi_g106676 HDT3, HD2C not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g30097 HD2, HDA4, HD2B,... HD2-type histone deacetylase *(HD2/HDT) & original... 0.02 OrthoFinder output from all 47 species
Aob_g05943 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.04 OrthoFinder output from all 47 species
Aop_g12332 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.06 OrthoFinder output from all 47 species
Aop_g15503 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0245.g060013 No alias not classified & original description: CDS=211-1146 0.04 OrthoFinder output from all 47 species
Cba_g05176 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Cba_g31332 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.02 OrthoFinder output from all 47 species
Ceric.33G031600.1 HDA3, ATHD2A,... HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000388.65 ATFKBP53, FKBP53 Protein modification.protein folding and quality... 0.04 OrthoFinder output from all 47 species
Cre12.g551050 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g11095 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g41486 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g20489 HDA3, ATHD2A, HDT1, HD2A peptidyl-prolyl cis-trans isomerase *(FKBP43/53) &... 0.05 OrthoFinder output from all 47 species
GSVIVT01031404001 HDA3, ATHD2A, HDT1, HD2A Chromatin organisation.histone modifications.histone... 0.07 OrthoFinder output from all 47 species
LOC_Os05g51830.1 HDT3, HD2C,... histone deacetylase (HDT/HD2) 0.03 OrthoFinder output from all 47 species
Lfl_g22573 HDT3, HD2C HD2-type histone deacetylase *(HD2/HDT) & original... 0.04 OrthoFinder output from all 47 species
MA_118767g0010 HDA3, ATHD2A, HDT1, HD2A histone deacetylase (HDT/HD2) 0.02 OrthoFinder output from all 47 species
MA_3905g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_601245g0010 No alias histone deacetylase (HDT/HD2) 0.04 OrthoFinder output from all 47 species
Nbi_g12444 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.02 OrthoFinder output from all 47 species
Ore_g06815 HD2, HDA4, HD2B,... HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species
Ore_g34458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07356 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.02 OrthoFinder output from all 47 species
Sam_g14661 No alias HD2-type histone deacetylase *(HD2/HDT) & original... 0.04 OrthoFinder output from all 47 species
Solyc09g009030.4.1 HDA3, ATHD2A,... histone deacetylase (HDT/HD2) 0.08 OrthoFinder output from all 47 species
Spa_g40541 HDT3, HD2C HD2-type histone deacetylase *(HD2/HDT) & original... 0.05 OrthoFinder output from all 47 species
Tin_g20431 HDA3, ATHD2A, HDT1, HD2A HD2-type histone deacetylase *(HD2/HDT) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR041232 NPL 3 91
No external refs found!