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  5. Zm00001e031640_P002

Zm00001e031640_P002 (RPH1, Zm00001e031640)


Aliases : RPH1, Zm00001e031640

Description : no description available(sp|m1c5m7|rph1_soltu : 241.0)


Gene families : OG0006050 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006050_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e031640_P002

Target Alias Description ECC score Gene Family Method Actions
Aev_g24131 RPH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11899 RPH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22056 RPH1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08928 RPH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001374.9 RPH1 No description available 0.02 OrthoFinder output from all 47 species
Dac_g24608 RPH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g11977 RPH1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g38855 RPH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06539 RPH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011060001 RPH1 No description available 0.04 OrthoFinder output from all 47 species
LOC_Os05g33520.1 RPH1, LOC_Os05g33520 no description available(sp|m1c5m7|rph1_soltu : 245.0) 0.1 OrthoFinder output from all 47 species
Len_g11954 RPH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g00620 RPH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_122925g0010 RPH1 no description available(sp|q9zu82|rph1_arath : 127.0) 0.03 OrthoFinder output from all 47 species
Ore_g14460 RPH1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g18881 RPH1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g25811 RPH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g15587 RPH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017006 RPH1 not classified & original description: CDS=688-1419 0.03 OrthoFinder output from all 47 species
Sam_g29486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo165828 RPH1 No description available 0.03 OrthoFinder output from all 47 species
Solyc05g055850.3.1 RPH1, Solyc05g055850 no description available(sp|m1c5m7|rph1_soltu : 397.0) 0.02 OrthoFinder output from all 47 species
Spa_g11278 RPH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19889 RPH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!