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  5. Zm00001e031378_P001

Zm00001e031378_P001 (TPR16, Zm00001e031378)


Aliases : TPR16, Zm00001e031378

Description : TPR repeat-containing thioredoxin TTL2 OS=Arabidopsis thaliana (sp|f4ixe4|ttl2_arath : 86.3)


Gene families : OG0001935 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e031378_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00201040 TPR16,... DnaJ protein P58IPK homolog OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
AT2G41520 TPR15 Heat shock protein DnaJ with tetratricopeptide repeat 0.08 OrthoFinder output from all 47 species
AT5G12430 TPR16 Heat shock protein DnaJ with tetratricopeptide repeat 0.05 OrthoFinder output from all 47 species
Adi_g069297 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42826 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12835 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13510 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60896.t1 TPR16, Aspi01Gene60896 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.28G058300.1 TPR16, Ceric.28G058300 not classified & original description: pacid=50570376... 0.04 OrthoFinder output from all 47 species
Dac_g06726 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12352 TPR16 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g09838 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02947 TPR16 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g32058 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01005044001 TPR16 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
LOC_Os05g31056.1 TPR16, LOC_Os05g31056 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os05g31062.1 TPR16, LOC_Os05g31062 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g16220.1 TPR16 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g05014 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32560 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g35893 TPR16 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g39794 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02425 TPR16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36194 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g016410.3.1 TPR16, Solyc04g016410 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Spa_g38094 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001623 DnaJ_domain 1291 1373
No external refs found!