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Aliases : Zm00001e031052
Description : Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana (sp|q9fkc3|pp424_arath : 600.0)
Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e031052_P001 | |
| Cluster | HCCA: Cluster_11 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00007p00203740 | EMB2453, ATPPR5,... | Pentatricopeptide repeat-containing protein At4g39620,... | 0.03 | OrthoFinder output from all 47 species | |
| AT3G06430 | EMB2750 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| AT3G53170 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.1 | OrthoFinder output from all 47 species | |
| AT4G39620 | EMB2453, ATPPR5 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.07 | OrthoFinder output from all 47 species | |
| AT5G48730 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | OrthoFinder output from all 47 species | |
| Azfi_s0174.g055903 | EMB2453, ATPPR5 | not classified & original description: CDS=133-1563 | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g02809 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01017677001 | EMB2750 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01028689001 | No alias | Pentatricopeptide repeat-containing protein At5g48730,... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01032162001 | No alias | Pentatricopeptide repeat-containing protein At3g53170... | 0.09 | OrthoFinder output from all 47 species | |
| Gb_36199 | EMB2453, ATPPR5 | Pentatricopeptide repeat-containing protein At4g39620,... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os02g51480.1 | EMB2453, ATPPR5,... | Pentatricopeptide repeat-containing protein PPR5... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g02430.1 | LOC_Os03g02430 | Pentatricopeptide repeat-containing protein At3g53170... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os03g19650.3 | EMB2750, LOC_Os03g19650 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g07550.1 | LOC_Os06g07550 | Pentatricopeptide repeat-containing protein At5g48730,... | 0.07 | OrthoFinder output from all 47 species | |
| MA_10431478g0010 | No alias | Pentatricopeptide repeat-containing protein At5g48730,... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g27398 | EMB2453, ATPPR5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g09304 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g16720 | EMB2453, ATPPR5 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g30371 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0066.g016075 | No alias | not classified & original description: CDS=33-1412 | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g006500.4.1 | Solyc01g006500 | Pentatricopeptide repeat-containing protein At5g48730,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g057200.4.1 | EMB2750, Solyc01g057200 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g054270.4.1 | EMB2453, ATPPR5,... | Pentatricopeptide repeat-containing protein PPR5... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc08g045780.4.1 | Solyc08g045780 | Pentatricopeptide repeat-containing protein At3g53170... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc12g098990.2.1 | EMB2750, Solyc12g098990 | Pentatricopeptide repeat-containing protein At3g06430,... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| No external refs found! |