1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e030868_P001

Zm00001e030868_P001 (SS2, AtSS2, Zm00001e030868)


Aliases : SS2, AtSS2, Zm00001e030868

Description : starch synthase (SSII)


Gene families : OG0001429 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001429_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030868_P001
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
AT3G01180 SS2, AtSS2 starch synthase 2 0.02 OrthoFinder output from all 47 species
AT5G24300 SSI1, ATSS1, SSI Glycogen/starch synthases, ADP-glucose type 0.03 OrthoFinder output from all 47 species
Adi_g010891 SS2, AtSS2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04105 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06429 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0001.g000433 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: CDS=512-2494 0.03 OrthoFinder output from all 47 species
Cba_g04027 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Cre04.g215150 SSI1, ATSS1, SSI Enzyme classification.EC_2 transferases.EC_2.4... 0.01 OrthoFinder output from all 47 species
Dcu_g04935 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04999 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011429001 SS2, AtSS2 Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
LOC_Os06g06560.1 SSI1, ATSS1,... starch synthase (SSI) 0.01 OrthoFinder output from all 47 species
LOC_Os06g12450.1 SS2, AtSS2,... starch synthase (SSII) 0.06 OrthoFinder output from all 47 species
Lfl_g01990 SSI1, ATSS1, SSI EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g25350.1 SSI1, ATSS1, SSI starch synthase (SSI) 0.04 OrthoFinder output from all 47 species
Nbi_g07560 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13598 SS2, AtSS2 EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008184 glycogen phosphorylase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR001296 Glyco_trans_1 543 693
IPR013534 Starch_synth_cat_dom 242 484
No external refs found!