Zm00001e030328_P001 (ATRGTA1, RGTA1, Zm00001e030328)

Aliases : ATRGTA1, RGTA1, Zm00001e030328

Description : subunit alpha of RAB-GTPase geranylgeranyltransferase (RGT) complex

Gene families : OG0004280 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004280_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e030328_P001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00228890	ATRGTA1, RGTA1,...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Als_g05655	ATRGTA1, RGTA1	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Azfi_s0008.g011314	ATRGTA1, RGTA1	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Ceric.01G053200.1	ATRGTA1, RGTA1,...	EC_2.5 transferase transferring alkyl or aryl group,...	0.06	OrthoFinder output from all 47 species
Dcu_g03999	ATRGTA1, RGTA1	EC_2.5 transferase transferring alkyl or aryl group,...	0.03	OrthoFinder output from all 47 species
Ehy_g02507	ATRGTA1, RGTA1	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Gb_29233	ATRGTA1, RGTA1	subunit alpha of RAB-GTPase geranylgeranyltransferase...	0.04	OrthoFinder output from all 47 species
LOC_Os06g46380.1	RGTA2, ATRGTA2,...	subunit alpha of RAB-GTPase geranylgeranyltransferase...	0.05	OrthoFinder output from all 47 species
Mp8g15030.1	ATRGTA1, RGTA1	subunit alpha of RAB-GTPase geranylgeranyltransferase...	0.02	OrthoFinder output from all 47 species
Pnu_g08971	ATRGTA1, RGTA1	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Sam_g29926	No alias	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species
Solyc04g076430.3.1	ATRGTA1, RGTA1,...	subunit alpha of RAB-GTPase geranylgeranyltransferase...	0.03	OrthoFinder output from all 47 species
Tin_g11933	ATRGTA1, RGTA1	EC_2.5 transferase transferring alkyl or aryl group,...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004659	prenyltransferase activity	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008318	protein prenyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	None	Extended
BP	GO:0018342	protein prenylation	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0097354	prenylation	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
MF	GO:0004571	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006488	dolichol-linked oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0006490	oligosaccharide-lipid intermediate biosynthetic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
MF	GO:0015924	mannosyl-oligosaccharide mannosidase activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0106073	dolichyl pyrophosphate Glc2Man9GlcNAc2 alpha-1,2-glucosyltransferase activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002088	Prenyl_trans_a	126	150
IPR002088	Prenyl_trans_a	89	116
IPR002088	Prenyl_trans_a	207	232
IPR002088	Prenyl_trans_a	48	71
IPR002088	Prenyl_trans_a	161	188

External Links

No external refs found!

Zm00001e030328_P001 (ATRGTA1, RGTA1, Zm00001e030328)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation