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  5. Zm00001e030241_P001

Zm00001e030241_P001 (Zm00001e030241)


Aliases : Zm00001e030241

Description : psbJ/psbN-translation activator (LPE1)


Gene families : OG0007915 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007915_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030241_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00149530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46610... 0.02 OrthoFinder output from all 47 species
Adi_g057096 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.02 OrthoFinder output from all 47 species
Aob_g06057 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene63078.t1 Aspi01Gene63078 psbJ/psbN-translation activator *(LPE1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.23G070300.1 Ceric.23G070300 psbJ/psbN-translation activator *(LPE1) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01003980001 No alias Pentatricopeptide repeat-containing protein At3g46610... 0.03 OrthoFinder output from all 47 species
Pir_g00606 No alias psbJ/psbN-translation activator *(LPE1) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008272 sulfate transport IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015116 sulfate transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:1901682 sulfur compound transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 421 449
IPR002885 Pentatricopeptide_repeat 112 141
IPR002885 Pentatricopeptide_repeat 343 371
IPR002885 Pentatricopeptide_repeat 385 414
IPR002885 Pentatricopeptide_repeat 521 569
IPR002885 Pentatricopeptide_repeat 451 494
IPR002885 Pentatricopeptide_repeat 178 225
No external refs found!