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  5. Zm00001e030145_P002

Zm00001e030145_P002 (Zm00001e030145)


Aliases : Zm00001e030145

Description : SSU processome assembly factor (UTP7)


Gene families : OG0006880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030145_P002
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT3G10530 No alias Transducin/WD40 repeat-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g13645 No alias SSU processome assembly factor *(UTP7) & original... 0.02 OrthoFinder output from all 47 species
Cba_g01069 No alias SSU processome assembly factor *(UTP7) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001366.4 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Cre12.g502800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Dcu_g06282 No alias SSU processome assembly factor *(UTP7) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g17090 No alias SSU processome assembly factor *(UTP7) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01034665001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
LOC_Os01g08770.1 LOC_Os01g08770 SSU processome assembly factor (UTP7) 0.1 OrthoFinder output from all 47 species
Lfl_g12209 No alias SSU processome assembly factor *(UTP7) & original... 0.04 OrthoFinder output from all 47 species
MA_446g0040 No alias SSU processome assembly factor (UTP7) 0.1 OrthoFinder output from all 47 species
Mp2g15260.1 No alias SSU processome assembly factor (UTP7) 0.05 OrthoFinder output from all 47 species
Ore_g10628 No alias SSU processome assembly factor *(UTP7) & original... 0.03 OrthoFinder output from all 47 species
Smo402172 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Solyc05g008190.3.1 Solyc05g008190 SSU processome assembly factor (UTP7) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 251 284
IPR012952 BING4_C_dom 331 409
No external refs found!