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  5. Zm00001e029999_P001

Zm00001e029999_P001 (Zm00001e029999)


Aliases : Zm00001e029999

Description : pectate lyase


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e029999_P001
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
AT3G54920 PMR6 Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G24780 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
LOC_Os06g05272.1 AT59, LOC_Os06g05272 pectate lyase 0.04 OrthoFinder output from all 47 species
LOC_Os06g38510.2 LOC_Os06g38510 pectate lyase 0.02 OrthoFinder output from all 47 species
LOC_Os06g38520.1 LOC_Os06g38520 Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os10g31910.1 LOC_Os10g31910 pectate lyase 0.02 OrthoFinder output from all 47 species
MA_10430145g0030 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
Solyc09g008380.3.1 Solyc09g008380 pectate lyase 0.03 OrthoFinder output from all 47 species
Zm00001e040624_P001 Zm00001e040624 pectate lyase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 189 370
IPR007524 Pec_lyase_N 44 88
No external refs found!