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  5. Zm00001e029672_P001

Zm00001e029672_P001 (Zm00001e029672)


Aliases : Zm00001e029672

Description : tRNA pseudouridine synthase (TruB)


Gene families : OG0003765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003765_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e029672_P001
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00225390 evm_27.TU.AmTr_v1... RNA processing.RNA... 0.04 OrthoFinder output from all 47 species
AT5G14460 No alias Pseudouridine synthase family protein 0.09 OrthoFinder output from all 47 species
Adi_g012222 No alias TruB-type tRNA pseudouridine synthase & original... 0.02 OrthoFinder output from all 47 species
Aev_g06744 No alias TruB-type tRNA pseudouridine synthase & original... 0.03 OrthoFinder output from all 47 species
Als_g02535 No alias TruB-type tRNA pseudouridine synthase & original... 0.02 OrthoFinder output from all 47 species
Aop_g12048 No alias TruB-type tRNA pseudouridine synthase & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0051.g031272 No alias TruB-type tRNA pseudouridine synthase & original... 0.05 OrthoFinder output from all 47 species
Cba_g23041 No alias TruB-type tRNA pseudouridine synthase & original... 0.02 OrthoFinder output from all 47 species
Ceric.07G028400.1 Ceric.07G028400 TruB-type tRNA pseudouridine synthase & original... 0.05 OrthoFinder output from all 47 species
Cre16.g690250 No alias RNA processing.RNA... 0.01 OrthoFinder output from all 47 species
GSVIVT01032383001 No alias RNA processing.RNA... 0.08 OrthoFinder output from all 47 species
LOC_Os05g01750.1 LOC_Os05g01750 tRNA pseudouridine synthase (TruB) 0.04 OrthoFinder output from all 47 species
Len_g31733 No alias TruB-type tRNA pseudouridine synthase & original... 0.03 OrthoFinder output from all 47 species
Lfl_g34116 No alias TruB-type tRNA pseudouridine synthase & original... 0.02 OrthoFinder output from all 47 species
Mp5g11570.1 No alias tRNA pseudouridine synthase (TruB) 0.03 OrthoFinder output from all 47 species
Ore_g25312 No alias TruB-type tRNA pseudouridine synthase & original... 0.05 OrthoFinder output from all 47 species
Ore_g35846 No alias TruB-type tRNA pseudouridine synthase & original... 0.02 OrthoFinder output from all 47 species
Pir_g02810 No alias TruB-type tRNA pseudouridine synthase & original... 0.02 OrthoFinder output from all 47 species
Pnu_g08977 No alias TruB-type tRNA pseudouridine synthase & original... 0.01 OrthoFinder output from all 47 species
Ppi_g02642 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g35797 No alias TruB-type tRNA pseudouridine synthase & original... 0.02 OrthoFinder output from all 47 species
Sam_g26745 No alias TruB-type tRNA pseudouridine synthase & original... 0.02 OrthoFinder output from all 47 species
Smo75554 No alias RNA processing.RNA... 0.04 OrthoFinder output from all 47 species
Solyc02g093460.4.1 Solyc02g093460 tRNA pseudouridine synthase (TruB) 0.05 OrthoFinder output from all 47 species
Spa_g51764 No alias TruB-type tRNA pseudouridine synthase & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008837 diaminopimelate epimerase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0047661 amino-acid racemase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002501 PsdUridine_synth_N 299 449
IPR032819 TruB_C 450 492
No external refs found!