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  5. Zm00001e029209_P001

Zm00001e029209_P001 (PAT2, Zm00001e029209)


Aliases : PAT2, Zm00001e029209

Description : large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex


Gene families : OG0006164 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006164_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e029209_P001

Target Alias Description ECC score Gene Family Method Actions
AT3G55480 PAT2 protein affected trafficking 2 0.03 OrthoFinder output from all 47 species
Adi_g077141 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.05 OrthoFinder output from all 47 species
Aev_g10362 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.02 OrthoFinder output from all 47 species
Ala_g22699 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
Aob_g12108 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.03 OrthoFinder output from all 47 species
Aop_g26219 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.02 OrthoFinder output from all 47 species
Cba_g13894 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.02 OrthoFinder output from all 47 species
Ceric.28G061600.1 PAT2, Ceric.28G061600 large subunit beta of AP-3 Golgi to vacuole cargo... 0.07 OrthoFinder output from all 47 species
Dcu_g19428 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.07 OrthoFinder output from all 47 species
GSVIVT01016531001 PAT2 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
Gb_19472 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex 0.08 OrthoFinder output from all 47 species
LOC_Os01g74180.1 PAT2, LOC_Os01g74180 large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex 0.12 OrthoFinder output from all 47 species
MA_10436689g0010 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex 0.04 OrthoFinder output from all 47 species
Mp6g07170.1 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex 0.02 OrthoFinder output from all 47 species
Ore_g20296 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010874 PAT2 large subunit beta of AP-3 Golgi to vacuole cargo... 0.02 OrthoFinder output from all 47 species
Smo118138 PAT2 Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
Solyc06g043030.4.1 PAT2, Solyc06g043030 large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
CC GO:0035658 Mon1-Ccz1 complex IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
InterPro domains Description Start Stop
IPR029390 AP3B_C 811 893
IPR002553 Clathrin/coatomer_adapt-like_N 35 625
No external refs found!