Aliases : CCB3, atylmg3, YLMG3, Zm00001e028271
Description : assembly factor CCB3 of CCB cytochrome b6 maturation system (system IV)
Gene families : OG0006561 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006561_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Zm00001e028271_P001 | |
Cluster | HCCA: Cluster_4 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Als_g00510 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0318.g064397 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g04968 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.13G022000.1 | CCB3, atylmg3,... | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.04 | OrthoFinder output from all 47 species | |
Cre01.g052400 | No alias | Photosynthesis.photophosphorylation.cytochrome b6/f... | 0.04 | OrthoFinder output from all 47 species | |
Dac_g42478 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g02417 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.13 | OrthoFinder output from all 47 species | |
Dde_g40122 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01010180001 | CCB3, atylmg3, YLMG3 | Photosynthesis.photophosphorylation.cytochrome b6/f... | 0.06 | OrthoFinder output from all 47 species | |
Gb_04602 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os01g73540.1 | CCB3, atylmg3,... | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.12 | OrthoFinder output from all 47 species | |
Len_g10269 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g29461 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g04659 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g12781 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g00555 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0096.g019313 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g021000.3.1 | CCB3, atylmg3,... | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g17120 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g00420 | CCB3, atylmg3, YLMG3 | assembly factor CCB3 of CCB cytochrome b6 maturation... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0016020 | membrane | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
MF | GO:0008171 | O-methyltransferase activity | IEP | HCCA |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
CC | GO:0009507 | chloroplast | IEP | HCCA |
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009523 | photosystem II | IEP | HCCA |
CC | GO:0009536 | plastid | IEP | HCCA |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0010207 | photosystem II assembly | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
BP | GO:0015994 | chlorophyll metabolic process | IEP | HCCA |
BP | GO:0015995 | chlorophyll biosynthetic process | IEP | HCCA |
BP | GO:0016043 | cellular component organization | IEP | HCCA |
CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
BP | GO:0022607 | cellular component assembly | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
BP | GO:0042440 | pigment metabolic process | IEP | HCCA |
BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0046148 | pigment biosynthetic process | IEP | HCCA |
MF | GO:0046406 | magnesium protoporphyrin IX methyltransferase activity | IEP | HCCA |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
MF | GO:0051540 | metal cluster binding | IEP | HCCA |
BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
CC | GO:0098796 | membrane protein complex | IEP | HCCA |
CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR003425 | CCB3/YggT | 135 | 203 |
No external refs found! |