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  5. Zm00001e028209_P002

Zm00001e028209_P002 (SPA4, Zm00001e028209)


Aliases : SPA4, Zm00001e028209

Description : protein kinase (PEK). regulator component SPA of COP1-SPA E3 ligase subcomplex. regulator component SPA of COP1-SPA light signal transduction ubiquitin E3 ligase complex


Gene families : OG0000638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000638_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e028209_P002
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00174010 SPA3,... Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
AT1G53090 SPA4 SPA1-related 4 0.08 OrthoFinder output from all 47 species
AT2G46340 SPA1 SPA (suppressor of phyA-105) protein family 0.03 OrthoFinder output from all 47 species
AT3G15354 SPA3 SPA1-related 3 0.07 OrthoFinder output from all 47 species
Adi_g015282 SPA3 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Aev_g06797 SPA3 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Ala_g07511 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.02 OrthoFinder output from all 47 species
Ala_g09701 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.05 OrthoFinder output from all 47 species
Als_g51184 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.02 OrthoFinder output from all 47 species
Aspi01Gene00445.t1 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.02 OrthoFinder output from all 47 species
Aspi01Gene04009.t1 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.03 OrthoFinder output from all 47 species
Aspi01Gene13976.t1 SPA3, Aspi01Gene13976 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008529 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.06 OrthoFinder output from all 47 species
Cba_g15102 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.02 OrthoFinder output from all 47 species
Ceric.12G047000.1 SPA4, Ceric.12G047000 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Ceric.22G021600.1 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.06 OrthoFinder output from all 47 species
Ceric.23G014900.1 SPA4, Ceric.23G014900 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Cre02.g085050 FUS1, EMB168,... E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre13.g602700 SPA1 Protein modification.phosphorylation.PEK kinase 0.01 OrthoFinder output from all 47 species
Dac_g20526 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Dac_g44670 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Dde_g09629 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Ehy_g14133 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.03 OrthoFinder output from all 47 species
GSVIVT01007271001 FUS1, EMB168,... External stimuli response.light.red/far red... 0.04 OrthoFinder output from all 47 species
LOC_Os01g52640.3 SPA4, LOC_Os01g52640 protein kinase (PEK) 0.08 OrthoFinder output from all 47 species
LOC_Os02g53140.1 FUS1, EMB168,... protein kinase (PEK). component COP1 of COP1-SPA E3... 0.04 OrthoFinder output from all 47 species
Lfl_g12926 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.05 OrthoFinder output from all 47 species
MA_423393g0010 SPA3 protein kinase (PEK). regulator component SPA of... 0.03 OrthoFinder output from all 47 species
Msp_g14662 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.07 OrthoFinder output from all 47 species
Msp_g18911 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.03 OrthoFinder output from all 47 species
Nbi_g06333 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.04 OrthoFinder output from all 47 species
Ore_g26130 SPA3 regulatory component *(SPA) of COP1-SPA light signal... 0.03 OrthoFinder output from all 47 species
Pir_g13039 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Ppi_g49237 SPA4 regulatory component *(SPA) of COP1-SPA light signal... 0.02 OrthoFinder output from all 47 species
Sam_g08955 No alias component *(COP1) of COP1-SPA light signal transduction... 0.02 OrthoFinder output from all 47 species
Sam_g30164 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.07 OrthoFinder output from all 47 species
Smo101888 FUS1, EMB168,... Protein modification.phosphorylation.PEK kinase 0.07 OrthoFinder output from all 47 species
Smo141846 FUS1, EMB168,... External stimuli response.light.red/far red... 0.07 OrthoFinder output from all 47 species
Smo171333 FUS1, EMB168,... External stimuli response.light.red/far red... 0.06 OrthoFinder output from all 47 species
Smo98534 SPA4 External stimuli response.light.red/far red... 0.06 OrthoFinder output from all 47 species
Solyc07g063120.4.1 SPA3, Solyc07g063120 protein kinase (PEK). regulator component SPA of... 0.07 OrthoFinder output from all 47 species
Solyc12g013840.3.1 SPA3, Solyc12g013840 protein kinase (PEK). regulator component SPA of... 0.08 OrthoFinder output from all 47 species
Spa_g55052 SPA4 regulatory component *(Spa) of COP1-Spa light signal... 0.02 OrthoFinder output from all 47 species
Tin_g19820 FUS1, EMB168,... component *(COP1) of COP1-SPA light signal transduction... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 570 601
IPR001680 WD40_repeat 652 685
No external refs found!