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  5. Zm00001e028014_P001

Zm00001e028014_P001 (VCL1, EMB258, MAN,...)


Aliases : VCL1, EMB258, MAN, Zm00001e028014

Description : component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes


Gene families : OG0004533 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004533_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e028014_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00200210 VCL1, EMB258,... Vesicle trafficking.target membrane... 0.02 OrthoFinder output from all 47 species
AT2G38020 VCL1, EMB258, MAN vacuoleless1 (VCL1) 0.02 OrthoFinder output from all 47 species
Adi_g022790 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Aev_g06149 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Ala_g05428 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Dcu_g04890 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Dde_g20947 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
GSVIVT01020844001 VCL1, EMB258, MAN Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
Gb_09954 VCL1, EMB258, MAN component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.04 OrthoFinder output from all 47 species
LOC_Os01g47650.1 VCL1, EMB258,... component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.08 OrthoFinder output from all 47 species
Lfl_g10179 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
MA_74180g0010 VCL1, EMB258, MAN Protein VACUOLELESS1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp6g01660.1 VCL1, EMB258, MAN component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.02 OrthoFinder output from all 47 species
Ore_g19088 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Ppi_g03195 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Smo80688 VCL1, EMB258, MAN Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
Solyc07g056220.3.1 VCL1, EMB258,... component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0030014 CCR4-NOT complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR006925 Vps16_C 536 852
IPR006926 Vps16_N 55 440
No external refs found!