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  5. Zm00001e027946_P001

Zm00001e027946_P001 (Zm00001e027946)


Aliases : Zm00001e027946

Description : polygalacturonase (PGX1)


Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e027946_P001

Target Alias Description ECC score Gene Family Method Actions
AT1G60590 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g057212 No alias EC_3.2 glycosylase & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01028189001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_12008 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os01g44970.1 LOC_Os01g44970 polygalacturonase (PGX1) 0.05 OrthoFinder output from all 47 species
Lfl_g19271 No alias EC_3.2 glycosylase & original description: none 0.01 OrthoFinder output from all 47 species
Smo85947 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc04g008230.3.1 Solyc04g008230 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Tin_g06548 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 172 492
No external refs found!