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  5. Zm00001e027838_P001

Zm00001e027838_P001 (EMB2729, BE1, Zm00001e027838)


Aliases : EMB2729, BE1, Zm00001e027838

Description : starch branching enzyme


Gene families : OG0001102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e027838_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00224220 EMB2729, BE1,... Carbohydrate metabolism.starch... 0.06 OrthoFinder output from all 47 species
AT3G20440 EMB2729, BE1 Alpha amylase family protein 0.05 OrthoFinder output from all 47 species
Adi_g022934 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21982 SBE2.2 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g31856 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05750 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0034.g025292 SBE2.2 EC_2.4 glycosyltransferase & original description: CDS=218-2266 0.04 OrthoFinder output from all 47 species
Cba_g18095 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.17G017100.1 SBE2.2, Ceric.17G017100 EC_2.4 glycosyltransferase & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000981.14 SBE2.2 Carbohydrate metabolism.starch... 0.01 OrthoFinder output from all 47 species
Dcu_g07721 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01037695001 EMB2729, BE1 Carbohydrate metabolism.starch... 0.06 OrthoFinder output from all 47 species
Gb_38481 EMB2729, BE1 starch branching enzyme 0.07 OrthoFinder output from all 47 species
LOC_Os06g26234.1 EMB2729, BE1,... starch branching enzyme 0.03 OrthoFinder output from all 47 species
Len_g13716 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04199 SBE2.2 EC_2.4 glycosyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
MA_10435727g0010 EMB2729, BE1 1,4-alpha-glucan-branching enzyme 3,... 0.03 OrthoFinder output from all 47 species
Msp_g06324 SBE2.2 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08439 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g38583 SBE2.2 EC_2.4 glycosyltransferase & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g03209 SBE2.2 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48559 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002607 SBE2.1, BE3 EC_2.4 glycosyltransferase & original description: CDS=145-2544 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0131.g022118 SBE2.2 EC_2.4 glycosyltransferase & original description: CDS=185-2821 0.03 OrthoFinder output from all 47 species
Sam_g10572 No alias EC_2.4 glycosyltransferase & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g19444 No alias starch branching enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g34213 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc07g064830.3.1 EMB2729, BE1,... starch branching enzyme 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0043169 cation binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 428 502
IPR006048 A-amylase/branching_C 803 893
IPR004193 Glyco_hydro_13_N 126 200
No external refs found!