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  5. Zm00001e027719_P003

Zm00001e027719_P003 (ATDRH1, DRH1, Zm00001e027719)


Aliases : ATDRH1, DRH1, Zm00001e027719

Description : DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica (sp|q5jkf2|rh40_orysj : 697.0)


Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e027719_P003

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00096p00079870 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G55150 No alias DEA(D/H)-box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT3G06480 No alias DEAD box RNA helicase family protein 0.06 OrthoFinder output from all 47 species
Adi_g020036 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036389 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074120 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42061 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14759 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g22206 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33054 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09685 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Aop_g69490 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0020.g015531 ATDRH1, DRH1 not classified & original description: CDS=33-2831 0.02 OrthoFinder output from all 47 species
Cba_g09901 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Cba_g38235 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G038500.1 Ceric.21G038500 regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Ceric.27G030300.1 ATDRH1, DRH1,... not classified & original description: pacid=50605657... 0.07 OrthoFinder output from all 47 species
Dac_g12501 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g12670 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Dcu_g10539 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g25686 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Dcu_g41933 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.05 OrthoFinder output from all 47 species
Ehy_g17995 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007665001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
GSVIVT01017651001 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01032442001 ATDRH1, DRH1 RNA biosynthesis.transcriptional activation.MYB... 0.04 OrthoFinder output from all 47 species
LOC_Os01g36860.1 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
LOC_Os01g68320.2 LOC_Os01g68320 pre-mRNA splicing regulator (DDX5) 0.05 OrthoFinder output from all 47 species
LOC_Os11g46240.1 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g17375 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g51090 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Lfl_g13618 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.04 OrthoFinder output from all 47 species
MA_10432707g0010 ATDRH1, DRH1 DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_19015g0010 No alias pre-mRNA splicing regulator (DDX5) 0.03 OrthoFinder output from all 47 species
Mp3g07940.1 No alias pre-mRNA splicing regulator (DDX5) 0.02 OrthoFinder output from all 47 species
Nbi_g14167 ATDRH1, DRH1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g18088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08678 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19068 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Pir_g15938 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14840 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g57963 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Sam_g24783 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Sam_g29066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g057760.4.1 Solyc01g057760 DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc03g112350.4.1 Solyc03g112350 pre-mRNA splicing regulator (DDX5) 0.05 OrthoFinder output from all 47 species
Spa_g43704 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g56211 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016763_P001 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 376 484
IPR011545 DEAD/DEAH_box_helicase_dom 169 338
No external refs found!