Zm00001e027279_P001 (Zm00001e027279)


Aliases : Zm00001e027279

Description : RING-HC-class E3 ligase


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e027279_P001
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00164020 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT3G58030 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g021121 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021123 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110750 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07861 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09681 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43421.t1 Aspi01Gene43421 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0011.g012446 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0043.g027095 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0103.g044692 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0256.g060525 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.34G001100.1 Ceric.34G001100 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g30245 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05375 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09951 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_12398 No alias RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os01g61420.1 LOC_Os01g61420 RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species
Len_g09801 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04855 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Mp8g08340.1 No alias RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species
Ore_g38674 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g45037 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002512_P002 Zm00001e002512 RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
CC GO:0070461 SAGA-type complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!