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  5. Zm00001e026670_P001

Zm00001e026670_P001 (Zm00001e026670)


Aliases : Zm00001e026670

Description : Met-tRNA positioning component eIF5B of initiator tRNA carrier complex


Gene families : OG0003112 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003112_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e026670_P001
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s02879p00004340 evm_27.TU.AmTr_v1... No description available 0.07 OrthoFinder output from all 47 species
AT1G21160 No alias eukaryotic translation initiation factor 2 (eIF-2) family protein 0.09 OrthoFinder output from all 47 species
AT1G76810 No alias eukaryotic translation initiation factor 2 (eIF-2) family protein 0.04 OrthoFinder output from all 47 species
AT1G76820 No alias eukaryotic translation initiation factor 2 (eIF-2) family protein 0.02 OrthoFinder output from all 47 species
Adi_g012011 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Aob_g07436 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Ceric.31G051600.1 Ceric.31G051600 Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Dac_g13418 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Ehy_g14997 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
GSVIVT01034895001 No alias Protein biosynthesis.translation initiation.eIF5B... 0.03 OrthoFinder output from all 47 species
Gb_22102 No alias Met-tRNA positioning component eIF5B of initiator tRNA... 0.02 OrthoFinder output from all 47 species
Gb_28583 No alias Met-tRNA positioning component eIF5B of initiator tRNA... 0.03 OrthoFinder output from all 47 species
LOC_Os05g51500.1 LOC_Os05g51500 Met-tRNA positioning component eIF5B of initiator tRNA... 0.14 OrthoFinder output from all 47 species
Ore_g33223 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Smo166557 No alias Protein biosynthesis.translation initiation.eIF5B... 0.03 OrthoFinder output from all 47 species
Solyc03g058350.4.1 Solyc03g058350 Met-tRNA positioning component eIF5B of initiator tRNA... 0.11 OrthoFinder output from all 47 species
Solyc03g058390.2.1 Solyc03g058390 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Solyc06g054400.3.1 Solyc06g054400 Met-tRNA positioning component eIF5B of initiator tRNA... 0.08 OrthoFinder output from all 47 species
Spa_g56625 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR023115 TIF_IF2_dom3 1047 1141
IPR000795 T_Tr_GTP-bd_dom 705 913
IPR004161 EFTu-like_2 940 1018
No external refs found!