Zm00001e025575_P001 (VAM3, ATVAM3,...)


Aliases : VAM3, ATVAM3, ATSYP22, SGR3, SYP22, Zm00001e025575

Description : SYP2-group Qa-type SNARE component


Gene families : OG0001469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001469_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e025575_P001

Target Alias Description ECC score Gene Family Method Actions
AT4G17730 ATSYP23, SYP23 syntaxin of plants 23 0.03 OrthoFinder output from all 47 species
Azfi_s0349.g066486 VAM3, ATVAM3,... Qa-type SYP2-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Ceric.16G078800.1 SYP21, ATSYP21,... Qa-type SYP2-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
GSVIVT01024380001 SYP21, ATSYP21,... Vesicle trafficking.SNARE target membrane recognition... 0.09 OrthoFinder output from all 47 species
Nbi_g04055 SYP21, ATSYP21,... Qa-type SYP2-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species
Ppi_g04277 SYP21, ATSYP21,... Qa-type SYP2-group component of SNARE membrane fusion... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 226 277
IPR006011 Syntaxin_N 39 138
No external refs found!