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Aliases : Zm00001e025393
Description : histone demethylase (KDM3). transcription factor (JUMONJI)
Gene families : OG0000328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000328_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e025393_P001 | |
| Cluster | HCCA: Cluster_163 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00029p00058110 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00029p00058780 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00057p00206860 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00072p00101130 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g007698 | No alias | auxiliary component *(JMJ24) of COMPASS histone... | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g015325 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g020057 | No alias | histone demethylase *(KDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g035475 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g059802 | No alias | histone demethylase *(KDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g086369 | No alias | histone demethylase *(KDM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g109477 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g112855 | No alias | auxiliary component *(JMJ24) of COMPASS histone... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g113341 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g113607 | No alias | histone demethylase *(KDM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g17454 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g08108 | No alias | histone demethylase *(KDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g11073 | No alias | histone demethylase *(KDM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g11281 | No alias | histone demethylase *(KDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g13468 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g16620 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g20293 | No alias | histone demethylase *(KDM3) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Als_g54566 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g09074 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g05543 | No alias | histone demethylase *(KDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g19024 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g70469 | No alias | histone demethylase *(KDM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene13978.t1 | Aspi01Gene13978 | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene42684.t1 | Aspi01Gene42684 | histone demethylase *(KDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0100.g044279 | No alias | histone demethylase *(KDM3) & original description: CDS=159-2921 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0314.g064244 | No alias | histone demethylase *(KDM3) & original description: CDS=76-4551 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g31854 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.06G031200.1 | Ceric.06G031200 | histone demethylase *(KDM3) & original description:... | 0.14 | OrthoFinder output from all 47 species | |
| Ceric.11G069000.1 | Ceric.11G069000 | histone demethylase *(KDM3) & original description:... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.21G018000.1 | Ceric.21G018000 | histone demethylase *(KDM3) & original description:... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.21G078400.1 | Ceric.21G078400 | histone demethylase *(KDM3) & original description:... | 0.13 | OrthoFinder output from all 47 species | |
| Ceric.23G014800.1 | Ceric.23G014800 | histone demethylase *(KDM3) & original description:... | 0.1 | OrthoFinder output from all 47 species | |
| Cre10.g446850 | No alias | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.07 | OrthoFinder output from all 47 species | |
| Dcu_g12281 | No alias | histone demethylase *(KDM3) & original description: none | 0.12 | OrthoFinder output from all 47 species | |
| Dcu_g25444 | No alias | auxiliary component *(JMJ24) of COMPASS histone... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g41882 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g12667 | No alias | histone demethylase *(KDM3) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Dde_g18399 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g09272 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01031115001 | No alias | Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01038553001 | No alias | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_03988 | No alias | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os03g22540.1 | LOC_Os03g22540 | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g31594.1 | LOC_Os03g31594 | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.12 | OrthoFinder output from all 47 species | |
| Len_g08650 | No alias | histone demethylase *(KDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Len_g12082 | No alias | histone demethylase *(KDM3) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Len_g18303 | No alias | histone demethylase *(KDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Len_g23792 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g50090 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04275 | No alias | histone demethylase *(KDM3) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Lfl_g40363 | No alias | histone demethylase *(KDM3) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| MA_103030g0010 | No alias | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.14 | OrthoFinder output from all 47 species | |
| MA_136209g0010 | No alias | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.04 | OrthoFinder output from all 47 species | |
| MA_8576373g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Mp3g05610.1 | No alias | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g25890 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g05897 | No alias | histone demethylase *(KDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g13618 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g09343 | No alias | histone demethylase *(KDM3) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ore_g25616 | No alias | histone demethylase *(KDM3) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g30156 | No alias | histone demethylase *(KDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g02858 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g05001 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g15776 | No alias | histone demethylase *(KDM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g54695 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g04006 | No alias | histone demethylase *(KDM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g11101 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g31029 | No alias | histone demethylase *(KDM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g41358 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0006.g003123 | No alias | histone demethylase *(KDM3) & original description: CDS=1-2763 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0101.g019833 | No alias | histone demethylase *(KDM3) & original description: CDS=452-4519 | 0.06 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0133.g022266 | No alias | histone demethylase *(KDM3) & original description: CDS=48-3734 | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g13906 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g29690 | No alias | histone demethylase *(KDM3) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Sam_g40489 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g51855 | No alias | histone demethylase *(KDM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Solyc02g078790.4.1 | Solyc02g078790 | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.11 | OrthoFinder output from all 47 species | |
| Solyc02g079300.3.1 | B160, Solyc02g079300 | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g083240.4.1 | Solyc03g083240 | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g07604 | No alias | auxiliary component *(JMJ24) of COMPASS histone... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g18734 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g21917 | No alias | histone demethylase *(KDM3) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g48969 | No alias | histone demethylase *(KDM3) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g12985 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g17158 | No alias | histone demethylase *(KDM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e023535_P001 | Zm00001e023535 | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e034042_P001 | Zm00001e034042 | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0043631 | RNA polyadenylation | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0070566 | adenylyltransferase activity | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |