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  5. Zm00001e025292_P002

Zm00001e025292_P002 (EMB139, EMB506, Zm00001e025292)


Aliases : EMB139, EMB506, Zm00001e025292

Description : Ankyrin repeat domain-containing protein EMB506, chloroplastic OS=Arabidopsis thaliana (sp|q9sqk3|em506_arath : 289.0)


Gene families : OG0002523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e025292_P002
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AT5G40160 EMB139, EMB506 Ankyrin repeat family protein 0.09 OrthoFinder output from all 47 species
AT5G66055 EMB16, EMB2036, AKRP ankyrin repeat protein 0.03 OrthoFinder output from all 47 species
Adi_g032639 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13350 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g01661 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12249 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0092.g043044 No alias not classified & original description: CDS=221-829 0.02 OrthoFinder output from all 47 species
Dac_g10355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005198001 EMB16, EMB2036, AKRP Ankyrin repeat domain-containing protein, chloroplastic... 0.06 OrthoFinder output from all 47 species
Gb_02757 EMB139, EMB506 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g13000.1 EMB139, EMB506,... Ankyrin repeat domain-containing protein EMB506,... 0.07 OrthoFinder output from all 47 species
Mp4g14600.1 No alias Ankyrin repeat domain-containing protein, chloroplastic... 0.02 OrthoFinder output from all 47 species
Nbi_g00869 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16350 EMB139, EMB506 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g41339 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010764 No alias not classified & original description: CDS=422-1504 0.02 OrthoFinder output from all 47 species
Sam_g18486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52287 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g061820.4.1 EMB16, EMB2036,... Ankyrin repeat domain-containing protein, chloroplastic... 0.05 OrthoFinder output from all 47 species
Solyc09g009290.3.1 EMB139, EMB506,... Ankyrin repeat domain-containing protein EMB506,... 0.03 OrthoFinder output from all 47 species
Spa_g47848 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g32282 EMB139, EMB506 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR020683 DUF3447 182 263
No external refs found!