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  5. Zm00001e024954_P001

Zm00001e024954_P001 (CLPS3, Zm00001e024954)


Aliases : CLPS3, Zm00001e024954

Description : component Clp1 of Cleavage Factor II (CF-IIm) complex


Gene families : OG0003520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003520_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e024954_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00146p00018170 CLPS3,... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Adi_g040962 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.02 OrthoFinder output from all 47 species
Adi_g063486 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.02 OrthoFinder output from all 47 species
Aop_g14157 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.02 OrthoFinder output from all 47 species
Aop_g22381 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.03 OrthoFinder output from all 47 species
Aspi01Gene27178.t2 CLPS3, Aspi01Gene27178 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.38G063700.1 CLPS3, Ceric.38G063700 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.03 OrthoFinder output from all 47 species
Dcu_g03837 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.02 OrthoFinder output from all 47 species
Dde_g25534 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.02 OrthoFinder output from all 47 species
Ehy_g17586 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.03 OrthoFinder output from all 47 species
Gb_38785 CLPS3 component Clp1 of Cleavage Factor II (CF-IIm) complex 0.01 OrthoFinder output from all 47 species
LOC_Os02g12570.1 CLPS3, LOC_Os02g12570 component Clp1 of Cleavage Factor II (CF-IIm) complex 0.06 OrthoFinder output from all 47 species
Len_g14830 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.04 OrthoFinder output from all 47 species
Mp6g10380.1 CLPS3 component Clp1 of Cleavage Factor II (CF-IIm) complex 0.03 OrthoFinder output from all 47 species
Msp_g12143 CLPS3 component *(Clp1) of Cleavage Factor II (CF-IIm) complex... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0031124 mRNA 3'-end processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR010655 Clp1_C 327 438
IPR032324 Clp1_N 21 112
IPR032319 CLP1_P 134 322
No external refs found!