Zm00001e023825_P002 (SVP, AGL22, Zm00001e023825)

Aliases : SVP, AGL22, Zm00001e023825

Description : transcription factor (MADS/AGL)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e023825_P002
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00103080	AGL9, SEP3,...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
AT2G03710	AGL3, SEP4	K-box region and MADS-box transcription factor family protein	0.05	OrthoFinder output from all 47 species
AT2G14210	ANR1, AGL44	AGAMOUS-like 44	0.06	OrthoFinder output from all 47 species
AT2G45660	SOC1, AGL20, ATSOC1	AGAMOUS-like 20	0.04	OrthoFinder output from all 47 species
AT3G57390	AGL18	AGAMOUS-like 18	0.07	OrthoFinder output from all 47 species
Adi_g033073	AGL16	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g02910	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g12343	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g27246	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.11G071800.1	AGL91, Ceric.11G071800	MADS/AGL-type transcription factor & original...	0.08	OrthoFinder output from all 47 species
Dde_g25491	AGL8, FUL	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os03g03070.1	GL19, AGL19,...	MADS-box transcription factor 50 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Len_g52703	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g14037	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_95674g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Sam_g15459	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc10g017640.1.1	GL19, AGL19,...	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
Solyc12g056460.3.1	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Spa_g05130	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g55243	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e011565_P001	AGL7, AP1, Zm00001e011565	MADS-box transcription factor 15 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
Zm00001e014926_P001	AGL16, Zm00001e014926	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e018811_P001	AGL14, Zm00001e018811	transcription factor (MADS/AGL)	0.06	OrthoFinder output from all 47 species
Zm00001e038096_P002	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	92	170

External Links

No external refs found!

Zm00001e023825_P002 (SVP, AGL22, Zm00001e023825)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation