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  5. Zm00001e023357_P001

Zm00001e023357_P001 (LINC1, Zm00001e023357)


Aliases : LINC1, Zm00001e023357

Description : CRWN nuclear lamina lamin-like protein


Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023357_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00252300 LINC1,... Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.04 OrthoFinder output from all 47 species
AMTR_s00044p00204550 LINC4,... Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.04 OrthoFinder output from all 47 species
AT1G67230 LINC1 little nuclei1 0.06 OrthoFinder output from all 47 species
AT1G68790 LINC3 little nuclei3 0.09 OrthoFinder output from all 47 species
AT5G65770 LINC4 little nuclei4 0.04 OrthoFinder output from all 47 species
AT5G65780 ATBCAT-5 branched-chain amino acid aminotransferase 5 /... 0.06 OrthoFinder output from all 47 species
Adi_g018491 LINC3 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Adi_g055294 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Ala_g08422 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Aob_g07969 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010369 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Cba_g72039 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Ceric.07G023500.1 LINC2, Ceric.07G023500 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Ceric.31G070800.1 LINC2, Ceric.31G070800 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g09858 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g13504 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01007428001 LINC4 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.03 OrthoFinder output from all 47 species
GSVIVT01011972001 LINC3 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.06 OrthoFinder output from all 47 species
GSVIVT01031076001 LINC1 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.09 OrthoFinder output from all 47 species
Gb_03736 LINC2 CRWN nuclear lamina lamin-like protein 0.07 OrthoFinder output from all 47 species
LOC_Os01g56140.1 LINC4, LOC_Os01g56140 CRWN nuclear lamina lamin-like protein 0.14 OrthoFinder output from all 47 species
LOC_Os02g48010.1 LINC1, LOC_Os02g48010 CRWN nuclear lamina lamin-like protein 0.15 OrthoFinder output from all 47 species
Len_g57295 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03466 LINC3 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g13028 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Msp_g26620 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Ore_g11685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19012 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19679 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.06 OrthoFinder output from all 47 species
Ore_g28255 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g05343 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Sam_g14580 No alias nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Solyc02g089800.3.1 LINC1, Solyc02g089800 CRWN nuclear lamina lamin-like protein 0.14 OrthoFinder output from all 47 species
Solyc02g091960.4.1 LINC4, Solyc02g091960 CRWN nuclear lamina lamin-like protein 0.1 OrthoFinder output from all 47 species
Solyc03g045050.4.1 LINC1, Solyc03g045050 CRWN nuclear lamina lamin-like protein 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!