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Aliases : Zm00001e022962
Description : cohesin cofactor (PDS5)
Gene families : OG0000616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000616_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00017p00192140 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00061p00213120 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00065p00174980 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.06 | OrthoFinder output from all 47 species | |
| AT1G15940 | No alias | Tudor/PWWP/MBT superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT1G77600 | No alias | ARM repeat superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT1G80810 | No alias | Tudor/PWWP/MBT superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT4G31880 | No alias | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... | 0.08 | OrthoFinder output from all 47 species | |
| AT5G47690 | No alias | binding | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g019469 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g022401 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g117140 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g06778 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g18795 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g11522 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g20243 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g03900 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g62298 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g07435 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g06245 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g08128 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0076.g037833 | No alias | cohesin cofactor *(PDS5) & original description: CDS=1-5502 | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g04527 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.11G037000.1 | Ceric.11G037000 | cohesin cofactor *(PDS5) & original description:... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.34G009800.1 | Ceric.34G009800 | cohesin cofactor *(PDS5) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.37G021700.1 | Ceric.37G021700 | cohesin cofactor *(PDS5) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Cre01.g032550 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g14818 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g36421 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g02974 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g14145 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g25801 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01002731001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01002824001 | No alias | No description available | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01008876001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01023587001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01035890001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os02g39920.1 | LOC_Os02g39920 | cohesin cofactor (PDS5) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os06g17840.1 | LOC_Os06g17840 | cohesin cofactor (PDS5) | 0.07 | OrthoFinder output from all 47 species | |
| Len_g21353 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g21968 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g22380 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g46602 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g09667 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Mp3g13850.1 | No alias | cohesin cofactor (PDS5) | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g25546 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g25803 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g28747 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g04827 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g22700 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ore_g44286 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g14289 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g20541 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g51581 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g36032 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g57308 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g59813 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0038.g011973 | No alias | cohesin cofactor *(PDS5) & original description: CDS=154-4911 | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g14013 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g24524 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g35729 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g36827 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g065710.3.1 | Solyc06g065710 | cohesin cofactor (PDS5) | 0.08 | OrthoFinder output from all 47 species | |
| Solyc11g012770.2.1 | Solyc11g012770 | cohesin cofactor (PDS5) | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g09270 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g09451 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g18111 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003777 | microtubule motor activity | IEP | HCCA |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006265 | DNA topological change | IEP | HCCA |
| BP | GO:0006508 | proteolysis | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| BP | GO:0007018 | microtubule-based movement | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0019899 | enzyme binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0031047 | RNA-mediated gene silencing | IEP | HCCA |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0071103 | DNA conformation change | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |