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  5. Zm00001e022851_P002

Zm00001e022851_P002 (PMS1, Zm00001e022851)


Aliases : PMS1, Zm00001e022851

Description : component PMS1 of MLH1-PMS1 heterodimer


Gene families : OG0005197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e022851_P002

Target Alias Description ECC score Gene Family Method Actions
AT4G02460 PMS1 DNA mismatch repair protein, putative 0.03 OrthoFinder output from all 47 species
Ceric.21G086600.1 PMS1, Ceric.21G086600 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000057.93 PMS1 DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre04.g227000 PMS1 DNA damage response.DNA repair mechanisms.mismatch... 0.02 OrthoFinder output from all 47 species
Ehy_g15907 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01027985001 PMS1 DNA damage response.DNA repair mechanisms.mismatch... 0.06 OrthoFinder output from all 47 species
LOC_Os02g37920.1 PMS1, LOC_Os02g37920 component PMS1 of MLH1-PMS1 heterodimer 0.05 OrthoFinder output from all 47 species
Len_g24503 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Solyc09g074990.4.1 PMS1, Solyc09g074990 component PMS1 of MLH1-PMS1 heterodimer 0.05 OrthoFinder output from all 47 species
Spa_g19370 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR014790 MutL_C 780 937
IPR013507 DNA_mismatch_S5_2-like 228 346
No external refs found!