Aliases : PMS1, Zm00001e022851
Description : component PMS1 of MLH1-PMS1 heterodimer
Gene families : OG0005197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005197_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G02460 | PMS1 | DNA mismatch repair protein, putative | 0.03 | OrthoFinder output from all 47 species | |
Ceric.21G086600.1 | PMS1, Ceric.21G086600 | component *(PMS1) of MLH1-PMS1 heterodimer & original... | 0.06 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000057.93 | PMS1 | DNA mismatch repair protein PMS1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
Cre04.g227000 | PMS1 | DNA damage response.DNA repair mechanisms.mismatch... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g15907 | PMS1 | component *(PMS1) of MLH1-PMS1 heterodimer & original... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01027985001 | PMS1 | DNA damage response.DNA repair mechanisms.mismatch... | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os02g37920.1 | PMS1, LOC_Os02g37920 | component PMS1 of MLH1-PMS1 heterodimer | 0.05 | OrthoFinder output from all 47 species | |
Len_g24503 | PMS1 | component *(PMS1) of MLH1-PMS1 heterodimer & original... | 0.02 | OrthoFinder output from all 47 species | |
Solyc09g074990.4.1 | PMS1, Solyc09g074990 | component PMS1 of MLH1-PMS1 heterodimer | 0.05 | OrthoFinder output from all 47 species | |
Spa_g19370 | PMS1 | component *(PMS1) of MLH1-PMS1 heterodimer & original... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006298 | mismatch repair | IEA | Interproscan |
MF | GO:0030983 | mismatched DNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000151 | ubiquitin ligase complex | IEP | HCCA |
CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | HCCA |
CC | GO:0000775 | chromosome, centromeric region | IEP | HCCA |
MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
MF | GO:0003682 | chromatin binding | IEP | HCCA |
MF | GO:0003697 | single-stranded DNA binding | IEP | HCCA |
MF | GO:0003729 | mRNA binding | IEP | HCCA |
MF | GO:0003774 | cytoskeletal motor activity | IEP | HCCA |
MF | GO:0003777 | microtubule motor activity | IEP | HCCA |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005680 | anaphase-promoting complex | IEP | HCCA |
CC | GO:0005685 | U1 snRNP | IEP | HCCA |
BP | GO:0006260 | DNA replication | IEP | HCCA |
BP | GO:0006302 | double-strand break repair | IEP | HCCA |
BP | GO:0006303 | double-strand break repair via nonhomologous end joining | IEP | HCCA |
BP | GO:0006376 | mRNA splice site selection | IEP | HCCA |
BP | GO:0006952 | defense response | IEP | HCCA |
BP | GO:0007017 | microtubule-based process | IEP | HCCA |
BP | GO:0007018 | microtubule-based movement | IEP | HCCA |
BP | GO:0007059 | chromosome segregation | IEP | HCCA |
MF | GO:0008017 | microtubule binding | IEP | HCCA |
MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
BP | GO:0022402 | cell cycle process | IEP | HCCA |
BP | GO:0022414 | reproductive process | IEP | HCCA |
BP | GO:0022607 | cellular component assembly | IEP | HCCA |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | HCCA |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | HCCA |
MF | GO:0034061 | DNA polymerase activity | IEP | HCCA |
BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
BP | GO:0045132 | meiotic chromosome segregation | IEP | HCCA |
BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | HCCA |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
CC | GO:0098687 | chromosomal region | IEP | HCCA |
BP | GO:0098813 | nuclear chromosome segregation | IEP | HCCA |
CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
BP | GO:1903046 | meiotic cell cycle process | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |