Zm00001e022819_P002 (AGL16, Zm00001e022819)

Aliases : AGL16, Zm00001e022819

Description : transcription factor (MADS/AGL)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e022819_P002

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00254030	SHP2, AGL5,...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
AT2G26320	AGL33	AGAMOUS-like 33	0.03	OrthoFinder output from all 47 species
AT4G22950	GL19, AGL19	AGAMOUS-like 19	0.07	OrthoFinder output from all 47 species
Adi_g079998	AGL21	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g07052	AGL16	MADS/AGL-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Als_g04197	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Als_g11632	AGL65	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Als_g26927	AGL16	MADS/AGL-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Aop_g06391	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene17777.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene44620.t2	AGL6, Aspi01Gene44620	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene49757.t1	GL19, AGL19,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene56359.t1	AGL13, Aspi01Gene56359	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g09207	AGL13	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g37029	AGL16	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.29G021900.1	AGL16, Ceric.29G021900	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.39G001800.1	AGL104, Ceric.39G001800	MADS/AGL-type transcription factor & original...	0.01	OrthoFinder output from all 47 species
Dac_g08553	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Dcu_g02413	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g15498	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g08051	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g38503	AGL42	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Dde_g39145	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g10207	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ehy_g32401	AGL10, CAL1, CAL	not classified & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01000175001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01027579001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.06	OrthoFinder output from all 47 species
Gb_31417	AGL66	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
LOC_Os03g54170.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
LOC_Os04g52410.2	AGL32, TT16,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os05g11380.1	STK, AGL11,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os06g22760.1	AGL61, DIA,...	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
Len_g22235	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g24007	AGL6	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g30732	AGL13	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g38436	AGL6	not classified & original description: none	0.01	OrthoFinder output from all 47 species
MA_10256834g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_10432817g0010	SVP, AGL22	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Msp_g31320	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Nbi_g10109	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42896	AGL16	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g40304	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Pnu_g09567	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g13602	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001705	AGL32, TT16, ABS	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003069	No alias	not classified & original description: CDS=1-255	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004031	AGL29	MADS/AGL-type transcription factor & original...	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009704	ANR1, AGL44	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025791	AGL65	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sam_g18792	No alias	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g48749	No alias	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Solyc07g150138.1.1	Solyc07g150138	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Solyc10g080030.2.1	AGL18, Solyc10g080030	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
Solyc11g010570.2.1	SVP, AGL22,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Spa_g12713	AGL21	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g26227	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g28690	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e011565_P001	AGL7, AP1, Zm00001e011565	MADS-box transcription factor 15 OS=Oryza sativa subsp....	0.06	OrthoFinder output from all 47 species
Zm00001e012026_P002	AGL7, AP1, Zm00001e012026	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e013738_P001	AGL32, TT16,...	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
Zm00001e016529_P004	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e019029_P001	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e035509_P002	AGL7, AP1, Zm00001e035509	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	82	170
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Zm00001e022819_P002 (AGL16, Zm00001e022819)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation