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  5. Zm00001e021724_P005

Zm00001e021724_P005 (LHY1, LHY, Zm00001e021724)


Aliases : LHY1, LHY, Zm00001e021724

Description : transcription factor (MYB-related). circadian clock core oscillator protein (LHY|CCA1)


Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e021724_P005
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272270 LHY1, LHY,... Multi-process regulation.circadian clock.core oscillator... 0.05 OrthoFinder output from all 47 species
AMTR_s00044p00072910 RVE2, CIR1,... RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
AT1G01060 LHY1, LHY Homeodomain-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT2G46830 CCA1 circadian clock associated 1 0.06 OrthoFinder output from all 47 species
AT3G09600 No alias Homeodomain-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT4G01280 No alias Homeodomain-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G17300 RVE1 Homeodomain-like superfamily protein 0.05 OrthoFinder output from all 47 species
Ala_g12530 RVE2, CIR1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 OrthoFinder output from all 47 species
Als_g15171 RVE1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.02 OrthoFinder output from all 47 species
Aob_g01863 No alias circadian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g32805 LHY1, LHY circadian clock core oscillator protein *(LHY/CCA1) &... 0.02 OrthoFinder output from all 47 species
Aop_g13615 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g37981 RVE1 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01891.t1 Aspi01Gene01891 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01893.t1 Aspi01Gene01893 transcription factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene31403.t1 RVE1, Aspi01Gene31403 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000277 No alias circadian clock factor *(REVEILLE) & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0005.g008971 RVE1 transcription factor *(REVEILLE) & original description:... 0.06 OrthoFinder output from all 47 species
Azfi_s0042.g026930 CCA1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.06 OrthoFinder output from all 47 species
Cba_g24529 No alias circadian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G087900.1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.06G032400.1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description:... 0.05 OrthoFinder output from all 47 species
Dac_g06441 No alias transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23475 RVE1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 OrthoFinder output from all 47 species
Ehy_g09144 RVE1 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026956001 No alias Multi-process regulation.circadian clock.evening element... 0.03 OrthoFinder output from all 47 species
GSVIVT01027456001 CCA1 Multi-process regulation.circadian clock.core oscillator... 0.12 OrthoFinder output from all 47 species
GSVIVT01035231001 RVE1 RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
LOC_Os02g45670.1 LOC_Os02g45670 transcription factor (MYB-related). REVEILLE circadian... 0.08 OrthoFinder output from all 47 species
LOC_Os06g01670.1 LOC_Os06g01670 transcription factor (MYB-related). REVEILLE circadian... 0.1 OrthoFinder output from all 47 species
LOC_Os06g51260.1 RVE2, CIR1,... transcription factor (MYB-related) 0.06 OrthoFinder output from all 47 species
LOC_Os08g06110.3 LHY1, LHY, LOC_Os08g06110 transcription factor (MYB-related). circadian clock core... 0.07 OrthoFinder output from all 47 species
Lfl_g11537 RVE1 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g19096 No alias circadian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10289482g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g26311 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g50588 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42013 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017955 No alias circadian clock factor *(REVEILLE) & original... 0.02 OrthoFinder output from all 47 species
Sam_g51660 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Smo166821 No alias Multi-process regulation.circadian clock.core oscillator... 0.06 OrthoFinder output from all 47 species
Solyc03g098320.4.1 RVE1, Solyc03g098320 transcription factor (MYB-related) 0.07 OrthoFinder output from all 47 species
Solyc10g005080.3.1 LHY1, LHY, Solyc10g005080 transcription factor (MYB-related). circadian clock core... 0.07 OrthoFinder output from all 47 species
Solyc10g084370.3.1 Solyc10g084370 transcription factor (MYB-related). REVEILLE circadian... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0003873 6-phosphofructo-2-kinase activity IEP HCCA
MF GO:0003951 NAD+ kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006000 fructose metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006741 NADP biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008272 sulfate transport IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015116 sulfate transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901682 sulfur compound transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 24 67
No external refs found!