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  5. Zm00001e020972_P005

Zm00001e020972_P005 (ATDRH1, DRH1, Zm00001e020972)


Aliases : ATDRH1, DRH1, Zm00001e020972

Description : DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana (sp|q8h136|rh14_arath : 598.0)


Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020972_P005

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00096p00079870 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G06480 No alias DEAD box RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g020036 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036389 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057398 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074120 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14759 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18220 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22206 ATDRH1, DRH1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g33054 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09685 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Aspi01Gene18403.t1 ATDRH1, DRH1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016084 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Cba_g10365 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g68173 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G038500.1 Ceric.21G038500 regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Ceric.27G030300.1 ATDRH1, DRH1,... not classified & original description: pacid=50605657... 0.07 OrthoFinder output from all 47 species
Cre01.g021600 ATDRH1, DRH1 DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g10539 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g10540 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g17995 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20062 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016847001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
GSVIVT01017651001 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_10302 ATDRH1, DRH1 DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os01g10050.2 LOC_Os01g10050 pre-mRNA splicing regulator (DDX5) 0.06 OrthoFinder output from all 47 species
LOC_Os01g36860.1 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.06 OrthoFinder output from all 47 species
LOC_Os11g46240.1 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.12 OrthoFinder output from all 47 species
Len_g14109 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17375 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g51090 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Lfl_g05034 ATDRH1, DRH1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g13618 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Lfl_g39840 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432707g0010 ATDRH1, DRH1 DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_19015g0010 No alias pre-mRNA splicing regulator (DDX5) 0.04 OrthoFinder output from all 47 species
Mp3g07940.1 No alias pre-mRNA splicing regulator (DDX5) 0.02 OrthoFinder output from all 47 species
Msp_g07173 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Nbi_g14167 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02786 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08678 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g19068 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Pir_g15938 ATDRH1, DRH1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g45674 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017597 ATDRH1, DRH1 not classified & original description: CDS=159-3038 0.03 OrthoFinder output from all 47 species
Sam_g29066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g057760.4.1 Solyc01g057760 DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc03g112350.4.1 Solyc03g112350 pre-mRNA splicing regulator (DDX5) 0.03 OrthoFinder output from all 47 species
Solyc12g044860.3.1 Solyc12g044860 DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g56211 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 611 781
IPR001650 Helicase_C 818 926
No external refs found!