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  5. Zm00001e020778_P001

Zm00001e020778_P001 (ATPRP40A, PRP40A,...)


Aliases : ATPRP40A, PRP40A, Zm00001e020778

Description : pre-mRNA-processing protein (PRP40A/B)


Gene families : OG0002189 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020778_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00227470 ATPRP40A,... RNA processing.RNA splicing.U2-type-intron-specific... 0.08 OrthoFinder output from all 47 species
AT1G44910 ATPRP40A, PRP40A pre-mRNA-processing protein 40A 0.09 OrthoFinder output from all 47 species
AT3G19670 ATPRP40B, PRP40B pre-mRNA-processing protein 40B 0.13 OrthoFinder output from all 47 species
Adi_g060760 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Adi_g079667 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Adi_g109853 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Ala_g02608 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Ala_g12867 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Als_g08024 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Als_g23383 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Aob_g02355 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Aop_g27081 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0486.g073429 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Cba_g05967 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Ceric.06G057100.1 ATPRP40A,... pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Ceric.36G014500.1 ATPRP40A,... pre-mRNA-processing protein *(PRP40A/B) & original... 0.05 OrthoFinder output from all 47 species
Cre07.g351000 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Dcu_g33711 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.07 OrthoFinder output from all 47 species
Dde_g04452 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g02927 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g29464 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01009302001 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.08 OrthoFinder output from all 47 species
Gb_14217 ATPRP40A, PRP40A pre-mRNA-processing protein (PRP40A/B) 0.03 OrthoFinder output from all 47 species
LOC_Os01g34780.1 ATPRP40A,... pre-mRNA-processing protein (PRP40A/B) 0.14 OrthoFinder output from all 47 species
Lfl_g04256 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.09 OrthoFinder output from all 47 species
Lfl_g08148 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
MA_10433850g0010 ATPRP40A, PRP40A pre-mRNA-processing protein (PRP40A/B) 0.03 OrthoFinder output from all 47 species
MA_8888g0010 ATPRP40A, PRP40A pre-mRNA-processing protein (PRP40A/B) 0.03 OrthoFinder output from all 47 species
Mp2g00410.1 ATPRP40A, PRP40A pre-mRNA-processing protein (PRP40A/B) 0.05 OrthoFinder output from all 47 species
Ore_g17451 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.05 OrthoFinder output from all 47 species
Ore_g37601 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.04 OrthoFinder output from all 47 species
Pir_g18693 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Pir_g36695 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g33699 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g01375 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g08690 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011005 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0203.g025648 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13746 No alias pre-mRNA-processing protein *(PRP40A/B) & original... 0.06 OrthoFinder output from all 47 species
Sam_g40479 No alias pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Smo402621 ATPRP40A, PRP40A RNA processing.RNA splicing.U2-type-intron-specific... 0.08 OrthoFinder output from all 47 species
Solyc07g022760.4.1 ATPRP40A,... pre-mRNA-processing protein (PRP40A/B) 0.15 OrthoFinder output from all 47 species
Spa_g09384 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.02 OrthoFinder output from all 47 species
Spa_g10390 ATPRP40A, PRP40A pre-mRNA-processing protein *(PRP40A/B) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription elongation IEP HCCA
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR002713 FF_domain 638 693
IPR002713 FF_domain 774 820
IPR002713 FF_domain 429 478
IPR002713 FF_domain 567 613
IPR002713 FF_domain 496 546
IPR001202 WW_dom 190 217
IPR001202 WW_dom 232 258
No external refs found!