Zm00001e020666_P001 (ABCG40, PDR12,...)

Aliases : ABCG40, PDR12, ATABCG40, ATPDR12, Zm00001e020666

Description : subfamily ABCG transporter

Gene families : OG0000071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e020666_P001
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00185210	PDR6, ATPDR6,...	Solute transport.primary active transport.ABC...	0.04	OrthoFinder output from all 47 species
AMTR_s00056p00117010	PEN3, ABCG36,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
AT2G29940	ATPDR3, PDR3	pleiotropic drug resistance 3	0.03	OrthoFinder output from all 47 species
Adi_g034248	PDR4, ATPDR4	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g33536	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.04	OrthoFinder output from all 47 species
Als_g18808	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g38727	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g22545	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g23935	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g27569	ABCG40, PDR12,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g11576	ABCG40, PDR12,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g20896	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g36836	ABCG40, PDR12,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g68961	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene02142.t1	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0198.g057417	PDR11, ATPDR11	subfamily ABCG transporter & original description: CDS=1-4590	0.03	OrthoFinder output from all 47 species
Cba_g19030	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.01G110200.1	ABCG40, PDR12,...	subfamily ABCG transporter & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.10G030800.1	PEN3, ABCG36,...	subfamily ABCG transporter & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.19G065500.1	PDR11, ATPDR11,...	subfamily ABCG transporter & original description:...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000227.8	ATPDR3, PDR3	ABC transporter G family member 31 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dac_g09408	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g22022	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g36774	ABCG40, PDR12,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01017185001	ABCG40, PDR12,...	Solute transport.primary active transport.ABC...	0.05	OrthoFinder output from all 47 species
GSVIVT01017187001	ABCG40, PDR12,...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
GSVIVT01017196001	ABCG40, PDR12,...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
GSVIVT01017202001	ABCG40, PDR12,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
GSVIVT01017204001	ABCG40, PDR12,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
GSVIVT01034748001	PDR11, ATPDR11	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Gb_30093	ABCG40, PDR12,...	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
LOC_Os01g42380.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
LOC_Os01g42410.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.05	OrthoFinder output from all 47 species
LOC_Os02g32690.1	PIS1, ABCG37,...	subfamily ABCG transporter	0.05	OrthoFinder output from all 47 species
LOC_Os06g36090.1	PEN3, ABCG36,...	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
LOC_Os08g29570.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.05	OrthoFinder output from all 47 species
LOC_Os09g16330.2	ABCG40, PDR12,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
LOC_Os09g16449.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
MA_10348400g0010	PDR1, ATPDR1	ABC transporter G family member 29 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_10425791g0020	ABCG40, PDR12,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
MA_10427561g0020	ABCG40, PDR12,...	ABC transporter G family member 31 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
MA_2168g0010	PDR4, ATPDR4	ABC transporter G family member 44 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Pir_g14833	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g40989	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009392	ABCG40, PDR12,...	subfamily ABCG transporter & original description: CDS=1-4470	0.02	OrthoFinder output from all 47 species
Sam_g50121	No alias	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Smo441722	ABCG40, PDR12,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Solyc08g067610.3.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Solyc09g091660.3.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Tin_g20998	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g24868	PDR11, ATPDR11	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e019932_P002	PEN3, ABCG36,...	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006771	riboflavin metabolic process	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009231	riboflavin biosynthetic process	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030151	molybdenum ion binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042726	flavin-containing compound metabolic process	IEP	HCCA
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013581	PDR_assoc	731	795
IPR029481	ABC_trans_N	103	152
IPR013525	ABC_2_trans	514	725
IPR013525	ABC_2_trans	1183	1397
IPR003439	ABC_transporter-like_ATP-bd	886	1038
IPR003439	ABC_transporter-like_ATP-bd	178	360

External Links

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Zm00001e020666_P001 (ABCG40, PDR12,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation