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Aliases : CRM3, HCF152, Zm00001e020088
Description : HCF152 plastidial RNA transcript stability factor
Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e020088_P001 | |
| Cluster | HCCA: Cluster_100 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00002p00272000 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g03100,... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g116058 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g09008 | CRM3, HCF152 | plastidial transcript stability factor *(HCF152) &... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g05291 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g07350 | CRM3, HCF152 | plastidial transcript stability factor *(HCF152) &... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g09169 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g14031 | CRM3, HCF152 | plastidial transcript stability factor *(HCF152) &... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g09114 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g02795 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g16131 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g31310.1 | LOC_Os07g31310 | Pentatricopeptide repeat-containing protein At4g17616... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os12g01210.1 | CRM3, HCF152,... | HCF152 plastidial RNA transcript stability factor | 0.03 | OrthoFinder output from all 47 species | |
| Len_g11883 | CRM3, HCF152 | plastidial transcript stability factor *(HCF152) &... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g03303 | CRM3, HCF152 | plastidial transcript stability factor *(HCF152) &... | 0.02 | OrthoFinder output from all 47 species | |
| MA_743669g0010 | No alias | Pentatricopeptide repeat-containing protein At1g03100,... | 0.02 | OrthoFinder output from all 47 species | |
| MA_90791g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | OrthoFinder output from all 47 species | |
| Mp1g13160.1 | CRM3, HCF152 | HCF152 plastidial RNA transcript stability factor | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g63894 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g04413 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g12051 | No alias | plastidial transcript stability factor *(HCF152) &... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g12114 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo82002 | CRM3, HCF152 | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g06672 | CRM3, HCF152 | plastidial transcript stability factor *(HCF152) &... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g24136 | CRM3, HCF152 | plastidial transcript stability factor *(HCF152) &... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| MF | GO:0004345 | glucose-6-phosphate dehydrogenase activity | IEP | HCCA |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | HCCA |
| BP | GO:0006006 | glucose metabolic process | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | HCCA |
| MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| BP | GO:0019318 | hexose metabolic process | IEP | HCCA |
| MF | GO:0050661 | NADP binding | IEP | HCCA |
| No external refs found! |