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  5. Zm00001e019808_P001

Zm00001e019808_P001 (HAT3.1, Zm00001e019808)


Aliases : HAT3.1, Zm00001e019808

Description : transcription factor (PHD)


Gene families : OG0002217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002217_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e019808_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272780 HAT3.1,... RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
AT4G29940 PRHA pathogenesis related homeodomain protein A 0.02 OrthoFinder output from all 47 species
Adi_g115505 PRHA PHD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09843 PRHA PHD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0110.g045488 PRHA PHD-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G036500.1 PRHA, Ceric.21G036500 PHD-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Cre12.g492200 HAT3.1 RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
Dcu_g01709 PRHA PHD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g05450.1 PRHA, LOC_Os02g05450 transcription factor (PHD) 0.03 OrthoFinder output from all 47 species
LOC_Os06g12400.1 HAT3.1, LOC_Os06g12400 transcription factor (PHD) 0.04 OrthoFinder output from all 47 species
Len_g01344 PRHA PHD-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g27981 PRHA PHD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10427612g0010 HAT3.1 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp4g02060.1 PRHA transcription factor (PHD) 0.08 OrthoFinder output from all 47 species
Solyc07g008730.2.1 PRHA, Solyc07g008730 transcription factor (PHD) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 472 526
IPR001356 Homeobox_dom 804 849
IPR001356 Homeobox_dom 1047 1087
No external refs found!