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  5. Zm00001e019459_P001

Zm00001e019459_P001 (Zm00001e019459)


Aliases : Zm00001e019459

Description : KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica (sp|q75gr5|spin1_orysj : 307.0)


Gene families : OG0001245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e019459_P001
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT1G09660 No alias RNA-binding KH domain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g018194 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Adi_g020661 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Aev_g06401 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Ceric.23G029600.1 Ceric.23G029600 STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Ehy_g11909 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Ehy_g18880 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Ore_g08591 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR032377 STAR_dimer 29 73
IPR004088 KH_dom_type_1 142 185
No external refs found!