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  5. Zm00001e018920_P001

Zm00001e018920_P001 (VPS53, HIT1, ATVPS53,...)


Aliases : VPS53, HIT1, ATVPS53, Zm00001e018920

Description : component VPS53/HIT1 of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes


Gene families : OG0003936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003936_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e018920_P001
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
AT1G50500 VPS53, HIT1, ATVPS53 Membrane trafficking VPS53 family protein 0.1 OrthoFinder output from all 47 species
Aev_g06143 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.11 OrthoFinder output from all 47 species
Ala_g31947 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Als_g01928 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Aob_g03573 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Aop_g00781 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Azfi_s0010.g012081 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Cba_g01241 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Ceric.34G024900.1 VPS53, HIT1,... component *(VPS53/HIT1) of GARP/EARP... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001093.14 No alias Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.46 VPS53, HIT1, ATVPS53 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Dcu_g22740 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.18 OrthoFinder output from all 47 species
Ehy_g01626 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
GSVIVT01016094001 VPS53, HIT1, ATVPS53 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.15 OrthoFinder output from all 47 species
Gb_31031 VPS53, HIT1, ATVPS53 component VPS53/HIT1 of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Gb_31032 VPS53, HIT1, ATVPS53 component VPS53/HIT1 of GARP/EARP... 0.04 OrthoFinder output from all 47 species
LOC_Os01g67880.1 VPS53, HIT1,... component VPS53/HIT1 of GARP/EARP... 0.11 OrthoFinder output from all 47 species
Len_g14691 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Lfl_g04212 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.1 OrthoFinder output from all 47 species
Mp8g18200.1 VPS53, HIT1, ATVPS53 component VPS53/HIT1 of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Solyc04g049490.3.1 VPS53, HIT1,... component VPS53/HIT1 of GARP/EARP... 0.18 OrthoFinder output from all 47 species
Tin_g01215 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR007234 Vps53_N 2 418
No external refs found!