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  5. Zm00001e018453_P003

Zm00001e018453_P003 (LRS1, Zm00001e018453)


Aliases : LRS1, Zm00001e018453

Description : Dynein assembly factor with WDR repeat domains 1 OS=Chlamydomonas reinhardtii (sp|q3y8l7|daw1_chlre : 87.0)


Gene families : OG0002511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e018453_P003
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
Adi_g098959 LRS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02471 LRS1 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Als_g58023 LRS1 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ceric.06G068400.1 LRS1, Ceric.06G068400 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.56 LRS1 No description available 0.01 OrthoFinder output from all 47 species
Cre13.g583250 LRS1 No description available 0.02 OrthoFinder output from all 47 species
Dcu_g03095 LRS1 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
GSVIVT01021896001 LRS1 Dynein assembly factor with WDR repeat domains 1... 0.06 OrthoFinder output from all 47 species
Gb_30748 LRS1 Dynein assembly factor with WDR repeat domains 1... 0.07 OrthoFinder output from all 47 species
LOC_Os12g06810.1 LRS1, LOC_Os12g06810 Dynein assembly factor with WDR repeat domains 1... 0.04 OrthoFinder output from all 47 species
Lfl_g10497 LRS1 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
MA_18695g0010 LRS1 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_555156g0010 LRS1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp6g09950.1 LRS1 Flagellar WD repeat-containing protein Pf20... 0.04 OrthoFinder output from all 47 species
Msp_g01213 LRS1 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Nbi_g01281 LRS1 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ore_g09811 LRS1 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0088.g018560 LRS1 substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sam_g38266 No alias substrate adaptor of CUL4-based E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Smo139346 LRS1 Dynein assembly factor with WDR repeat domains 1... 0.06 OrthoFinder output from all 47 species
Solyc01g098090.3.1 LRS1, Solyc01g098090 Dynein assembly factor with WDR repeat domains 1... 0.05 OrthoFinder output from all 47 species
Solyc08g023590.4.1 LRS1, Solyc08g023590 Coatomer subunit alpha-2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Tin_g02857 LRS1 substrate adaptor of CUL4-based E3 ubiquiTin ligase... 0.04 OrthoFinder output from all 47 species
Tin_g05212 LRS1 substrate adaptor of CUL4-based E3 ubiquiTin ligase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006906 vesicle fusion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
CC GO:0035658 Mon1-Ccz1 complex IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0048280 vesicle fusion with Golgi apparatus IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061025 membrane fusion IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090174 organelle membrane fusion IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 248 283
IPR001680 WD40_repeat 115 154
IPR001680 WD40_repeat 210 241
IPR001680 WD40_repeat 34 67
IPR001680 WD40_repeat 79 110
IPR021772 WDR48/Bun107 602 749
No external refs found!