1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e016997_P001

Zm00001e016997_P001 (Zm00001e016997)


Aliases : Zm00001e016997

Description : endo-beta-1,4-xylanase


Gene families : OG0001478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016997_P001
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AT2G14690 No alias Glycosyl hydrolase superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G33820 No alias Glycosyl hydrolase superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g007681 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G035800.1 Ceric.30G035800 not classified & original description: pacid=50607993... 0.05 OrthoFinder output from all 47 species
Ceric.30G036100.1 Ceric.30G036100 not classified & original description: pacid=50608372... 0.03 OrthoFinder output from all 47 species
Dde_g37891 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01024049001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01037825001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01037832001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01037833001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_02219 No alias no description available(sp|q84wt5|xyn5l_arath : 355.0) 0.04 OrthoFinder output from all 47 species
LOC_Os01g04290.1 LOC_Os01g04290 endo-beta-1,4-xylanase 0.04 OrthoFinder output from all 47 species
LOC_Os01g04300.1 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.03 OrthoFinder output from all 47 species
LOC_Os05g25560.1 LOC_Os05g25560 endo-beta-1,4-xylanase 0.02 OrthoFinder output from all 47 species
Nbi_g11652 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g27748 ATXYN1, RXF12 endo-beta-1,4-xylanase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g077190.4.1 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.03 OrthoFinder output from all 47 species
Spa_g28892 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002760_P001 Zm00001e002760 no description available(sp|q680b7|xyn4_arath : 360.0) 0.03 OrthoFinder output from all 47 species
Zm00001e016992_P001 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.05 OrthoFinder output from all 47 species
Zm00001e038772_P001 Zm00001e038772 no description available(sp|q84wt5|xyn5l_arath : 392.0) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR001000 GH10_dom 248 513
No external refs found!