Zm00001e016810_P001 (TAF4, TAF4B, Zm00001e016810)

Aliases : TAF4, TAF4B, Zm00001e016810

Description : component TAF4 of TFIId basal transcription regulation complex

Gene families : OG0002362 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002362_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e016810_P001

Target	Alias	Description	ECC score	Gene Family Method
Aev_g38215	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.03	OrthoFinder output from all 47 species
Aop_g08190	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.04	OrthoFinder output from all 47 species
Ceric.35G034700.1	TAF4, TAF4B,...	component *(TAF4) of TFIId basal transcription...	0.03	OrthoFinder output from all 47 species
Cre02.g095800	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dcu_g42653	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.02	OrthoFinder output from all 47 species
LOC_Os02g43750.1	TAF4, TAF4B,...	component TAF4 of TFIId basal transcription regulation complex	0.04	OrthoFinder output from all 47 species
Lfl_g32571	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.04	OrthoFinder output from all 47 species
MA_168127g0010	TAF4, TAF4B	component TAF4 of TFIId basal transcription regulation complex	0.03	OrthoFinder output from all 47 species
Mp2g09230.1	TAF4, TAF4B	component TAF4 of TFIId basal transcription regulation complex	0.03	OrthoFinder output from all 47 species
Pnu_g19568	TAF4, TAF4B	component *(TAF4) of TFIId basal transcription...	0.03	OrthoFinder output from all 47 species
Zm00001e000487_P001	Zm00001e000487	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Zm00001e021306_P002	Zm00001e021306	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005669	transcription factor TFIID complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
MF	GO:0008192	RNA guanylyltransferase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009452	7-methylguanosine RNA capping	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
BP	GO:0036260	RNA capping	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
MF	GO:0070568	guanylyltransferase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022003	RST	125	187
IPR007900	TAF4_C	469	762

External Links

No external refs found!

Zm00001e016810_P001 (TAF4, TAF4B, Zm00001e016810)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation