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  5. Zm00001e015994_P001

Zm00001e015994_P001 (Zm00001e015994)


Aliases : Zm00001e015994

Description : Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana (sp|q0wp85|pp150_arath : 500.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e015994_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22670,... 0.04 OrthoFinder output from all 47 species
AT1G77360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g057762 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05820 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17604 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g58922 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04707 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g32634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011779001 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.05 OrthoFinder output from all 47 species
Lfl_g28170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g116540.1.1 Solyc03g116540 Pentatricopeptide repeat-containing protein At1g52640,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 220 269
IPR002885 Pentatricopeptide_repeat 442 489
IPR002885 Pentatricopeptide_repeat 289 346
IPR002885 Pentatricopeptide_repeat 359 419
No external refs found!