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  5. Zm00001e015757_P002

Zm00001e015757_P002 (FAS4, ATFAS4, Zm00001e015757)


Aliases : FAS4, ATFAS4, Zm00001e015757

Description : ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana (sp|q9c813|deahd_arath : 572.0)


Gene families : OG0005211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005211_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e015757_P002

Target Alias Description ECC score Gene Family Method Actions
AT1G33390 FAS4, ATFAS4 RNA helicase family protein 0.05 OrthoFinder output from all 47 species
Adi_g087222 FAS4, ATFAS4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13780 FAS4, ATFAS4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.09G059400.1 FAS4, ATFAS4,... not classified & original description: pacid=50588370... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000113.111 FAS4, ATFAS4 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Cre07.g352251 FAS4, ATFAS4 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01028054001 FAS4, ATFAS4 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os02g50370.1 FAS4, ATFAS4,... ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Lfl_g27239 FAS4, ATFAS4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp4g04560.1 FAS4, ATFAS4 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc01g095710.3.1 FAS4, ATFAS4,... ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 277 458
IPR011709 DEAD-box_helicase_OB_fold 1056 1143
IPR007502 Helicase-assoc_dom 847 974
IPR001650 Helicase_C 694 783
No external refs found!