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  5. Zm00001e015074_P001

Zm00001e015074_P001 (AtLa1, La1, Zm00001e015074)


Aliases : AtLa1, La1, Zm00001e015074

Description : RNA chaperone (LA). rRNA chaperone (IRP2)


Gene families : OG0003172 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003172_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e015074_P001
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00056900 AtLa1, La1,... La protein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT4G32720 AtLa1, La1 La protein 1 0.08 OrthoFinder output from all 47 species
Adi_g012248 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11552 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11426 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.07 OrthoFinder output from all 47 species
Ceric.26G010200.1 AtLa1, La1,... nascent RNA chaperone *(LA) & original description:... 0.07 OrthoFinder output from all 47 species
Dac_g09267 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g02803 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11687 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035666001 AtLa1, La1 La protein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_04532 AtLa1, La1 RNA chaperone (LA). rRNA chaperone (IRP2) 0.04 OrthoFinder output from all 47 species
LOC_Os02g39700.1 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.04 OrthoFinder output from all 47 species
LOC_Os04g42010.1 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.04 OrthoFinder output from all 47 species
Lfl_g25839 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
MA_697179g0010 AtLa1, La1 RNA chaperone (LA). rRNA chaperone (IRP2) 0.02 OrthoFinder output from all 47 species
MA_78251g0010 AtLa1, La1 La protein 1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Mp1g04820.1 AtLa1, La1 RNA chaperone (LA). rRNA chaperone (IRP2) 0.09 OrthoFinder output from all 47 species
Ore_g43153 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10339 No alias nascent RNA chaperone *(LA) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g10340 No alias nascent RNA chaperone *(LA) & original description: none 0.05 OrthoFinder output from all 47 species
Smo168828 AtLa1, La1 La protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc08g068310.3.1 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.12 OrthoFinder output from all 47 species
Spa_g09674 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31164 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR014886 La_xRRM 337 432
IPR006630 La_HTH 17 65
IPR000504 RRM_dom 123 180
No external refs found!