Zm00001e014833_P002 (ARF1, Zm00001e014833)


Aliases : ARF1, Zm00001e014833

Description : transcription factor (ARF)


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e014833_P002
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00168950 HSS, ARF1-BP,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00157690 ARF6,... RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
AT1G19850 MP, IAA24, ARF5 Transcriptional factor B3 family protein /... 0.03 OrthoFinder output from all 47 species
AT1G59750 ARF1 auxin response factor 1 0.04 OrthoFinder output from all 47 species
AT4G23980 ARF9 auxin response factor 9 0.03 OrthoFinder output from all 47 species
Adi_g014256 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g014286 ARF4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054964 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057044 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059116 ARF6 transcriptional repressor *(IAA/AUX) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088063 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02591 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11014 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14726 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32730 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33060 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33345 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g40259 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g06737 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22075 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24155 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27918 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07118 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12700 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21442 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g70630 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0005.g009155 ARF6 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0384.g067487 ARF8, ATARF8 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g07702 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11427 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g78264 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G061000.1 HSS, ARF1-BP,... ARF-type transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.10G078200.1 ARF6, Ceric.10G078200 ARF-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.18G060100.1 ARF1, Ceric.18G060100 ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.20G087500.1 ARF1, Ceric.20G087500 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.28G004000.1 HSS, ARF1-BP,... ARF-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.30G022300.1 ARF6, Ceric.30G022300 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.35G054000.1 ARF6, Ceric.35G054000 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g05759 ARF6 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g05781 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g32674 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g11626 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36299 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09257 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008639001 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01019566001 ARF9 RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01021552001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
GSVIVT01035204001 ARF8, ATARF8 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Gb_18738 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
LOC_Os01g70270.1 HSS, ARF1-BP,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os02g41800.1 ARF16, LOC_Os02g41800 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Len_g08347 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g11557 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g28161 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g29145 ARF1 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03495 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05750 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07404 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18657 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Msp_g14175 ARF6 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g39711 ARF6 transcriptional repressor *(IAA/AUX) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g15165 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g17376 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g096070.3.1 ARF9, Solyc01g096070 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Solyc02g077560.3.1 ARF3, ETT, Solyc02g077560 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc05g047460.3.1 ARF19, IAA22,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Solyc09g007810.4.1 ARF16, Solyc09g007810 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Spa_g17172 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g27871 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006640_P002 MP, IAA24, ARF5,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e013191_P001 ARF19, IAA22,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 531 636
IPR003340 B3_DNA-bd 122 222
IPR010525 ARF_dom 248 333
No external refs found!