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  5. Zm00001e013656_P001

Zm00001e013656_P001 (PRHA, Zm00001e013656)


Aliases : PRHA, Zm00001e013656

Description : transcription factor (PHD)


Gene families : OG0002217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002217_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e013656_P001
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
Als_g14636 PRHA PHD-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g01709 PRHA PHD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09205 HAT3.1 PHD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g05450.1 PRHA, LOC_Os02g05450 transcription factor (PHD) 0.05 OrthoFinder output from all 47 species
Len_g01344 PRHA PHD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g27981 PRHA PHD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13870 No alias PHD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04067 PRHA PHD-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 441 484
IPR019787 Znf_PHD-finger 187 241
No external refs found!