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  5. Zm00001e013640_P002

Zm00001e013640_P002 (SAR1, ATNUP160,...)


Aliases : SAR1, ATNUP160, NUP160, Zm00001e013640

Description : NUP160 scaffold nucleoporin of nuclear pore complex


Gene families : OG0004742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e013640_P002
Cluster HCCA: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00138020 SAR1, ATNUP160,... Protein translocation.nucleus.nucleocytoplasmic... 0.06 OrthoFinder output from all 47 species
AT1G33410 SAR1, ATNUP160, NUP160 SUPPRESSOR OF AUXIN RESISTANCE1 0.15 OrthoFinder output from all 47 species
Adi_g017509 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
Aev_g48633 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
Ala_g07840 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
Aop_g07555 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g010410 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
Cba_g13708 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.02 OrthoFinder output from all 47 species
Ceric.32G022400.1 SAR1, ATNUP160,... scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000691.37 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre07.g324000 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g09396 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.02 OrthoFinder output from all 47 species
Dcu_g09122 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.07 OrthoFinder output from all 47 species
Dde_g26399 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.02 OrthoFinder output from all 47 species
Ehy_g04055 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01015912001 SAR1, ATNUP160, NUP160 Protein translocation.nucleus.nucleocytoplasmic... 0.07 OrthoFinder output from all 47 species
Gb_36285 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Gb_36286 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
LOC_Os02g04970.1 SAR1, ATNUP160,... NUP160 scaffold nucleoporin of nuclear pore complex 0.16 OrthoFinder output from all 47 species
Len_g23832 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.03 OrthoFinder output from all 47 species
Lfl_g11272 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.02 OrthoFinder output from all 47 species
MA_10430989g0010 SAR1, ATNUP160, NUP160 Nuclear pore complex protein NUP160 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
MA_10436566g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_33415g0010 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Mp8g11350.1 SAR1, ATNUP160, NUP160 NUP160 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Msp_g14433 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.04 OrthoFinder output from all 47 species
Ore_g16665 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.03 OrthoFinder output from all 47 species
Ppi_g16275 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.05 OrthoFinder output from all 47 species
Sam_g49513 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo445056 SAR1, ATNUP160, NUP160 Protein translocation.nucleus.nucleocytoplasmic... 0.07 OrthoFinder output from all 47 species
Solyc01g102540.3.1 SAR1, ATNUP160,... NUP160 scaffold nucleoporin of nuclear pore complex 0.1 OrthoFinder output from all 47 species
Solyc01g102550.4.1 SAR1, ATNUP160,... Nuclear pore complex protein NUP160 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Spa_g07635 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.03 OrthoFinder output from all 47 species
Tin_g09156 SAR1, ATNUP160, NUP160 scaffold nucleoporin of nuclear pore complex *(NUP160) &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR035192 NUP160 546 737
No external refs found!