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  5. Zm00001e013359_P002

Zm00001e013359_P002 (Zm00001e013359)


Aliases : Zm00001e013359

Description : component SF3B2 of splicing factor 3B complex


Gene families : OG0004021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e013359_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00248990 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
AMTR_s00131p00018630 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.07 OrthoFinder output from all 47 species
AT4G21660 No alias proline-rich spliceosome-associated (PSP) family protein 0.04 OrthoFinder output from all 47 species
Ala_g23643 No alias component *(SF3B2) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Als_g17641 No alias component *(SF3B2) of splicing factor 3B complex &... 0.04 OrthoFinder output from all 47 species
Aop_g29274 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000829.24 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre12.g514450 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Dde_g06213 No alias component *(SF3B2) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g17357 No alias component *(SF3B2) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01002655001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_34166 No alias component SF3B2 of splicing factor 3B complex 0.02 OrthoFinder output from all 47 species
LOC_Os02g58090.1 LOC_Os02g58090 component SF3B2 of splicing factor 3B complex 0.07 OrthoFinder output from all 47 species
Lfl_g38051 No alias component *(SF3B2) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species
Mp7g16820.1 No alias component SF3B2 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
Msp_g32567 No alias component *(SF3B2) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Smo232603 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Solyc02g078610.4.1 Solyc02g078610 component SF3B2 of splicing factor 3B complex 0.1 OrthoFinder output from all 47 species
Solyc03g006520.3.1 Solyc03g006520 component SF3B2 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
Spa_g56443 No alias component *(SF3B2) of splicing factor 3B complex &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006568 PSP_pro-rich 307 352
IPR007180 DUF382 173 298
No external refs found!