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  5. Zm00001e013140_P001

Zm00001e013140_P001 (IMP4, Zm00001e013140)


Aliases : IMP4, Zm00001e013140

Description : SSU processome assembly factor (IMP4)


Gene families : OG0006971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006971_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e013140_P001
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00134540 IMP4,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT1G63780 IMP4 Ribosomal RNA processing Brix domain protein 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.22 IMP4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Cre10.g454100 IMP4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01000834001 IMP4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
LOC_Os08g05880.1 IMP4, LOC_Os08g05880 SSU processome assembly factor (IMP4) 0.04 OrthoFinder output from all 47 species
Mp2g04740.1 IMP4 SSU processome assembly factor (IMP4) 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001070 IMP4 SSU processome assembly factor *(IMP4) & original... 0.03 OrthoFinder output from all 47 species
Sam_g38548 No alias SSU processome assembly factor *(IMP4) & original... 0.02 OrthoFinder output from all 47 species
Solyc01g007250.4.1 IMP4, Solyc01g007250 SSU processome assembly factor (IMP4) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR007109 Brix 90 260
No external refs found!