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  5. Zm00001e013105_P001

Zm00001e013105_P001 (Zm00001e013105)


Aliases : Zm00001e013105

Description : basal transcription factor (TFIa/RRN3)


Gene families : OG0004620 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004620_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e013105_P001

Target Alias Description ECC score Gene Family Method Actions
Ala_g05450 No alias basal transcription factor *(TFIa/RRN3) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene29471.t1 Aspi01Gene29471 basal transcription factor *(TFIa/RRN3) & original... 0.04 OrthoFinder output from all 47 species
Cre03.g207950 No alias RNA biosynthesis.RNA polymerase I-dependent... 0.02 OrthoFinder output from all 47 species
Dcu_g24337 No alias basal transcription factor *(TFIa/RRN3) & original... 0.03 OrthoFinder output from all 47 species
Gb_32274 No alias basal transcription factor (TFIa/RRN3) 0.02 OrthoFinder output from all 47 species
MA_112855g0010 No alias basal transcription factor (TFIa/RRN3) 0.03 OrthoFinder output from all 47 species
Mp6g17000.1 No alias basal transcription factor (TFIa/RRN3) 0.02 OrthoFinder output from all 47 species
Sam_g27581 No alias basal transcription factor *(TFIa/RRN3) & original... 0.02 OrthoFinder output from all 47 species
Spa_g08444 No alias basal transcription factor *(TFIa/RRN3) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006474 N-terminal protein amino acid acetylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018206 peptidyl-methionine modification IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031414 N-terminal protein acetyltransferase complex IEP HCCA
CC GO:0031417 NatC complex IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR007991 RNA_pol_I_trans_ini_fac_RRN3 14 538
No external refs found!