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  5. Zm00001e012678_P001

Zm00001e012678_P001 (Zm00001e012678)


Aliases : Zm00001e012678

Description : Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana (sp|q9saj5|pp133_arath : 516.0)


Gene families : OG0022522 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0022522_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e012678_P001
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00202120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g79540... 0.03 OrthoFinder output from all 47 species
Gb_10463 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.03 OrthoFinder output from all 47 species
LOC_Os09g02260.1 LOC_Os09g02260 Pentatricopeptide repeat-containing protein At1g79540... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 539 587
IPR002885 Pentatricopeptide_repeat 209 258
IPR002885 Pentatricopeptide_repeat 351 400
IPR002885 Pentatricopeptide_repeat 422 469
IPR002885 Pentatricopeptide_repeat 320 344
IPR002885 Pentatricopeptide_repeat 685 713
IPR002885 Pentatricopeptide_repeat 613 634
IPR002885 Pentatricopeptide_repeat 129 186
IPR002885 Pentatricopeptide_repeat 275 302
No external refs found!